Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g22682.t1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | 1 | positive |
| g14414.t1 | RNA HELICASE | 0.97 | positive |
| g14418.t1 | SERINE/THREONINE-PROTEIN KINASE | 0.96 | positive |
| g14336.t1 | UNCHARACTERIZED | 0.96 | positive |
| g2527.t1 | FRG1 PROTEIN | 0.96 | positive |
| g1080.t1 | RAS GTPASE-ACTIVATING PROTEINS | 0.95 | positive |
| g4859.t1 | COATOMER SUBUNIT GAMMA | 0.95 | positive |
| g3277.t1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA | 0.95 | positive |
| g5225.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.95 | positive |
| g11264.t1 | PRE-MRNA SPLICING FACTOR | 0.95 | positive |
| g31371.t1 | DULLARD PROTEIN PHOSPHATASE | 0.95 | positive |
| g11969.t1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO | 0.95 | positive |
| g25522.t1 | -- | 0.95 | positive |
| g8513.t1 | HOMEOBOX PROTEIN NKX | 0.95 | positive |
| g10110.t1 | -- | 0.95 | positive |
| g26487.t1 | -- | 0.94 | positive |
| g74.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 | 0.94 | positive |
| g35170.t1 | MYOSIN LIGHT CHAIN 1, 3 | 0.94 | positive |
| g27969.t1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS | 0.94 | positive |
| g10504.t1 | -- | 0.94 | positive |
| g6119.t1 | ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4 | 0.94 | positive |
| g3495.t1 | NIBRIN-RELATED | 0.94 | positive |
| g34739.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 0.93 | positive |
| g16326.t1 | CENTROSOMAL PROTEIN 2 | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 111 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
