Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g23402.t1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR | 1 | positive |
| g19815.t1 | RAS-RELATED GTP BINDING RAG/GTR YEAST | 0.96 | positive |
| g12557.t1 | ANOCTAMIN | 0.95 | positive |
| g10490.t1 | UPF0183 PROTEIN | 0.94 | positive |
| g35953.t1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD | 0.94 | positive |
| g3825.t1 | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 0.93 | positive |
| g571.t1 | N-ALPHA-ACETYLTRANSFERASE 20 | 0.93 | positive |
| g21251.t1 | N-LINKED OLIGOSACCHARIDE PROCESSING | 0.93 | positive |
| g13360.t1 | PRESEQUENCE PROTEASE | 0.93 | positive |
| g27527.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 10 | 0.93 | positive |
| g5237.t1 | PERSULFIDE DIOXYGENASE ETHE1 | 0.93 | positive |
| g20495.t1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN | 0.92 | positive |
| g17797.t1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED | 0.92 | positive |
| g20602.t1 | DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED | 0.92 | positive |
| g18958.t1 | MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS | 0.92 | positive |
| g11151.t1 | PEPTIDASE M20 | 0.92 | positive |
| g7210.t1 | - | 0.92 | positive |
| g19068.t1 | VESICLE PROTEIN SORTING-ASSOCIATED | 0.92 | positive |
| g28704.t1 | -- | 0.92 | positive |
| g13862.t1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 0.92 | positive |
| g9526.t1 | - | 0.92 | positive |
| g13706.t1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING | 0.92 | positive |
| g27085.t1 | -- | 0.92 | positive |
| g2922.t1 | REQUIRED FOR RESPIRATORY GROWTH PROTEIN 7, MITOCHONDRIAL | 0.92 | positive |
| g20291.t1 | CAMK FAMILY PROTEIN KINASE | 0.91 | positive |
| g28784.t1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 | 0.91 | positive |
| g19987.t1 | ATP-BINDING CASSETTE SUB-FAMILY C | 0.91 | positive |
| g17107.t1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 | 0.91 | positive |
| g7937.t1 | PROTEIN PHOSPHATASE 2C | 0.90 | positive |
| g18240.t1 | SI:CH211-108C17.2-RELATED-RELATED | 0.71 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 139 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
