Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g24875.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g24875.t1
Gene ID Description PCC Relationship
g24875.t1ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 11positive
g34685.t1NAD DEPENDENT EPIMERASE/DEHYDRATASE0.99positive
g10020.t1RNA BINDING PROTEIN0.99positive
g25261.t1HYALURONIC ACID-BINDING PROTEIN 40.99positive
g7412.t1NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN0.99positive
g7227.t1DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED0.99positive
g13964.t1GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE0.99positive
g6611.t1ALDEHYDE DEHYDROGENASE-RELATED0.99positive
g12296.t1ARYLSULFATASE0.99positive
g1820.t1CYTOCHROME P450 FAMILY 30.99positive
g5012.t1RIBOSOMAL PROTEIN L300.99positive
g27403.t1HYALURONIC ACID-BINDING PROTEIN 40.99positive
g8688.t1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER0.99positive
g35279.t1SHISA0.99positive
g4432.t1--0.99positive
g34673.t152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED0.99positive
g17853.t1LYSOSOMAL ACID LIPASE-RELATED0.99positive
g4612.t1MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED0.98positive
g12811.t1ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 10.98positive
g7278.t1HSC70-INTERACTING PROTEIN0.98positive
g16727.t1TUBULIN0.98positive
g11836.t1GEO12009P10.98positive
g16281.t1ADENYLYL CYCLASE-ASSOCIATED PROTEIN0.98positive
g8820.t1ADDUCIN0.98positive
g1939.t1--0.98positive
g35079.t1SERINE/THREONINE PROTEIN KINASE0.98positive
g10281.t1--0.98positive
g17848.t1CHAPERONIN0.98positive
g13791.t1ANGIOTENSIN-CONVERTING ENZYME0.98positive
g4575.t1-0.98positive
g16084.t1MCG48959-RELATED0.98positive
g34845.t1NEUROMODULIN0.98positive
g1156.t1FUMARYLACETOACETASE0.98positive
g2807.t1SHORT-CHAIN DEHYDROGENASE/REDUCTASE0.98positive
g33845.t1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED0.98positive
g27099.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 70.98positive
g22508.t1HSC70-INTERACTING PROTEIN0.98positive
g13877.t1PROTEIN CBG266940.98positive
g914.t1PROTEIN PATCHED0.97positive
g5022.t1KICSTOR COMPLEX PROTEIN C12ORF660.97positive
g4993.t1ALANYL-TRNA SYNTHETASE0.94positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 171 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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