Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g2718.t1 | PROTEIN PHOSPHATASE 2C | 1 | positive |
| g7735.t1 | MULTIFUNCTIONAL PROTEIN ADE2 | 0.93 | positive |
| g8731.t1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR | 0.92 | positive |
| g21446.t1 | INTERLEUKIN ENHANCER-BINDING FACTOR | 0.92 | positive |
| g8082.t1 | CENTROMERE PROTEIN C | 0.92 | positive |
| g35989.t1 | CELL CYCLE CONTROL PROTEIN CWF22-RELATED | 0.92 | positive |
| g28153.t1 | CENTLEIN | 0.90 | positive |
| g7292.t1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED | 0.88 | positive |
| g2368.t1 | RAN GTPASE | 0.88 | positive |
| g1659.t1 | SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN | 0.85 | positive |
| g2548.t1 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 0.84 | positive |
| g34681.t1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED | 0.83 | positive |
| g726.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 0.83 | positive |
| g8080.t1 | RHO GTPASE-ACTIVATING PROTEIN 100F | 0.83 | positive |
| g9752.t1 | GEM-ASSOCIATED PROTEIN 8 | 0.83 | positive |
| g1022.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 0.82 | positive |
| g13331.t1 | UNCHARACTERIZED | 0.82 | positive |
| g9388.t1 | CELL DIVISION CYCLE 16,23,27 | 0.82 | positive |
| g26316.t1 | DNA POLYMERASE TYPE-X FAMILY MEMBER | 0.81 | positive |
| g29381.t1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN | 0.81 | positive |
| g16551.t1 | PRE-MRNA-SPLICING FACTOR RBM22 | 0.81 | positive |
| g28858.t1 | ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4 | 0.80 | positive |
| g1480.t1 | -- | 0.80 | positive |
| g2918.t1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | 0.80 | positive |
| g12000.t1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN | 0.78 | positive |
| g27606.t1 | ATP-DEPENDENT RNA HELICASE DBP3 | 0.78 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 107 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
