Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g27667.t1 | -- | 1 | positive |
| g23976.t1 | SODIUM/CALCIUM EXCHANGER | 0.96 | positive |
| g7709.t1 | SUPPRESSOR OF VARIEGATION 4-20-RELATED | 0.96 | positive |
| g2283.t1 | CXXC-TYPE ZINC FINGER PROTEIN 1 | 0.96 | positive |
| g27665.t1 | LUPUS LA PROTEIN-RELATED | 0.95 | positive |
| g10554.t1 | OS02G0815200 PROTEIN | 0.95 | positive |
| g28013.t1 | SCP160 | 0.94 | positive |
| g14719.t1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED | 0.94 | positive |
| g18376.t1 | PHD FINGER PROTEIN 12 | 0.94 | positive |
| g6731.t1 | -- | 0.93 | positive |
| g12059.t1 | CRYPTOCHROME | 0.93 | positive |
| g6476.t1 | PHD/F-BOX CONTAINING PROTEIN | 0.93 | positive |
| g14082.t1 | CARNITINE O-ACYLTRANSFERASE | 0.93 | positive |
| g13004.t1 | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE | 0.93 | positive |
| g18546.t1 | -- | 0.92 | positive |
| g4700.t1 | -- | 0.92 | positive |
| g5324.t1 | PX DOMAIN-CONTAINING PROTEIN | 0.92 | positive |
| g13656.t1 | NUCLEOBINDIN | 0.92 | positive |
| g4795.t1 | -- | 0.92 | positive |
| g32562.t1 | -- | 0.92 | positive |
| g27999.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | 0.91 | positive |
| g5091.t1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED | 0.91 | positive |
| g1295.t1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 | 0.91 | positive |
| g2282.t1 | -- | 0.90 | positive |
| g36531.t1 | SIMILAR TO RIKEN CDNA E130308A19 | 0.89 | positive |
| g21932.t1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 97 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
