Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g27740.t1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED | 1 | positive |
| g27061.t1 | RAB GDP-DISSOCIATION INHIBITOR | 0.96 | positive |
| g1428.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.96 | positive |
| g23789.t1 | MALATE SYNTHASE | 0.96 | positive |
| g11655.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 | 0.96 | positive |
| g35047.t1 | GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN | 0.96 | positive |
| g23603.t1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO | 0.96 | positive |
| g7559.t1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE | 0.96 | positive |
| g17122.t1 | NUCLEOLAR PROTEIN 8 | 0.96 | positive |
| g4065.t1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED | 0.96 | positive |
| g21418.t1 | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED | 0.96 | positive |
| g2885.t1 | TYROSINE-PROTEIN KINASE | 0.96 | positive |
| g23413.t1 | FORMIN-BINDING PROTEIN 4 | 0.96 | positive |
| g27347.t1 | PROTEIN CBG16200 | 0.96 | positive |
| g27414.t1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED | 0.95 | positive |
| g18490.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN | 0.95 | positive |
| g16765.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 0.95 | positive |
| g12078.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER | 0.95 | positive |
| g6872.t1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE | 0.95 | positive |
| g31411.t1 | TNF RECEPTOR ASSOCIATED FACTOR | 0.95 | positive |
| g35490.t1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 0.95 | positive |
| g6321.t1 | PROTEASE M14 CARBOXYPEPTIDASE | 0.95 | positive |
| g30044.t1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 | 0.94 | positive |
| g5348.t1 | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 0.94 | positive |
| g28720.t1 | LD33804P | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 90 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
