Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g27897.t1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA | 1 | positive |
| g11030.t1 | ENOLASE | 0.96 | positive |
| g12606.t1 | ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL | 0.95 | positive |
| g12238.t1 | FI01416P | 0.94 | positive |
| g8390.t1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED | 0.94 | positive |
| g2234.t1 | DISULFIDE OXIDOREDUCTASE | 0.94 | positive |
| g11884.t1 | - | 0.93 | positive |
| g10031.t1 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 | 0.93 | positive |
| g521.t1 | TETRA THYMOSIN | 0.92 | positive |
| g29029.t1 | UNCHARACTERIZED | 0.92 | positive |
| g2079.t1 | UBIQUITIN-CONJUGATING ENZYME E2 | 0.92 | positive |
| g15083.t1 | NUCLEOSIDE DIPHOSPHATE KINASE | 0.92 | positive |
| g1020.t1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT | 0.91 | positive |
| g11062.t1 | PIERCE HOMOLOG | 0.91 | positive |
| g9924.t1 | L 2 01289 | 0.91 | positive |
| g14604.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 | 0.91 | positive |
| g35048.t1 | ENOYL-COA HYDRATASE-RELATED | 0.90 | positive |
| g11647.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 | 0.90 | positive |
| g17405.t1 | ATP SYNTHASE DELTA CHAIN | 0.90 | positive |
| g27309.t1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE | 0.89 | positive |
| g28417.t1 | N-MYC DOWNSTREAM REGULATED | 0.89 | positive |
| g21457.t1 | SEC10 | 0.89 | positive |
| g29718.t1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN | 0.89 | positive |
| g3103.t1 | CYTOCHROME C OXIDASE SUBUNIT 6B | 0.89 | positive |
| g11956.t1 | ATP-DEPENDENT RNA HELICASE DBP3 | 0.88 | positive |
| g11202.t1 | 8-OXOGUANINE DNA GLYCOSYLASE | 0.88 | positive |
| g16926.t1 | UNCHARACTERIZED | 0.87 | positive |
| g34851.t1 | TRANSMEMBRANE PROTEIN 232 | 0.87 | positive |
| g7549.t1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED | 0.87 | positive |
| g9639.t1 | -- | 0.87 | positive |
| g6828.t1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 | 0.85 | positive |
| g7430.t1 | -- | 0.82 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 223 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
