Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g28015.t1 | RHO FAMILY GTPASE | 1 | positive |
| g9464.t1 | CADHERIN-23 | 0.97 | positive |
| g560.t1 | -- | 0.96 | positive |
| g23806.t1 | VOLTAGE-GATED POTASSIUM CHANNEL | 0.95 | positive |
| g362.t1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN | 0.95 | positive |
| g2902.t1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 0.95 | positive |
| g3299.t1 | REGULATORY-ASSOCIATED PROTEIN OF MTOR | 0.95 | positive |
| g3345.t1 | 3-5 EXONUCLEASE | 0.95 | positive |
| g10197.t1 | INHIBITOR OF APOPTOSIS | 0.94 | positive |
| g16627.t1 | EPSIN/ENT-RELATED | 0.94 | positive |
| g8067.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE | 0.94 | positive |
| g6655.t1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 0.94 | positive |
| g3237.t1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED | 0.94 | positive |
| g15001.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 0.94 | positive |
| g12598.t1 | T-CELL ACTIVATION INHIBITOR, MITOCHONDRIAL | 0.94 | positive |
| g14204.t1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED | 0.93 | positive |
| g12373.t1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 0.93 | positive |
| g35457.t1 | RNA HELICASE | 0.93 | positive |
| g28086.t1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 | 0.93 | positive |
| g3205.t1 | TRANSCRIPTIONAL ADAPTER 3-RELATED | 0.93 | positive |
| g509.t1 | AMINOMETHYLTRANSFERASE | 0.93 | positive |
| g6476.t1 | PHD/F-BOX CONTAINING PROTEIN | 0.93 | positive |
| g4897.t1 | CRUMBS FAMILY MEMBER | 0.93 | positive |
| g3599.t1 | -- | 0.93 | positive |
| g13656.t1 | NUCLEOBINDIN | 0.93 | positive |
| g1295.t1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 | 0.93 | positive |
| g9699.t1 | CARBOHYDRATE SULFOTRANSFERASE | 0.92 | positive |
| g30370.t1 | GLR0591 PROTEIN | 0.92 | positive |
| g7212.t1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 0.92 | positive |
| g17256.t1 | -- | 0.91 | positive |
| g20967.t1 | REGULATOR-RELATED | 0.90 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 143 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
