Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g28027.t1 | FI24210P1 | 1 | positive |
| g29384.t1 | -- | 0.98 | positive |
| g6505.t1 | NITRIC OXIDE SYNTHASE-RELATED | 0.98 | positive |
| g295.t1 | -- | 0.98 | positive |
| g9738.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT | 0.97 | positive |
| g20136.t1 | PHEROMONE SHUTDOWN PROTEIN | 0.97 | positive |
| g7431.t1 | -- | 0.97 | positive |
| g12341.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.97 | positive |
| g3586.t1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 | 0.97 | positive |
| g15081.t1 | - | 0.97 | positive |
| g2000.t1 | -- | 0.97 | positive |
| g8358.t1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED | 0.97 | positive |
| g23743.t1 | LD33804P | 0.97 | positive |
| g9525.t1 | - | 0.97 | positive |
| g11138.t1 | BANK1/PIK3AP1 FAMILY MEMBER | 0.97 | positive |
| g633.t1 | MOLTING PROTEIN MLT-4 | 0.97 | positive |
| g4500.t1 | RIKEN CDNA 9930021J03 GENE | 0.97 | positive |
| g5326.t1 | D-GLUCURONYL C5-EPIMERASE | 0.96 | positive |
| g27269.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g4160.t1 | -- | 0.96 | positive |
| g11633.t1 | TRANSCRIPTIONAL ADAPTER 1 | 0.96 | positive |
| g9295.t1 | STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED | 0.96 | positive |
| g2191.t1 | RUBY-EYE2-LIKE PROTEIN | 0.96 | positive |
| g3555.t1 | FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN | 0.96 | positive |
| g4334.t1 | -- | 0.96 | positive |
| g16482.t1 | S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED | 0.96 | positive |
| g5277.t1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD | 0.96 | positive |
| g22100.t1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN | 0.96 | positive |
| g4161.t1 | MULTICOPPER OXIDASE-RELATED | 0.96 | positive |
| g23744.t1 | LD33804P | 0.96 | positive |
| g6210.t1 | METHYLMALONYL-COA MUTASE | 0.96 | positive |
| g27755.t1 | HOMER | 0.96 | positive |
| g5791.t1 | PLACENTAL PROTEIN 6 | 0.96 | positive |
| g23138.t1 | UBIQUITIN SPECIFIC PROTEINASE | 0.95 | positive |
| g4159.t1 | LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g920.t1 | FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I | 0.95 | positive |
| g27687.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 | 0.95 | positive |
| g27861.t1 | CENTROSOMAL PROTEIN OF 170 KDA | 0.95 | positive |
| g31915.t1 | -- | 0.95 | positive |
| g19595.t1 | IP01015P-RELATED | 0.95 | positive |
| g4902.t1 | -- | 0.95 | positive |
| g3313.t1 | -- | 0.95 | positive |
| g12272.t1 | SERINE/THREONINE-PROTEIN KINASE 17 | 0.95 | positive |
| g4266.t1 | -- | 0.95 | positive |
| g27754.t1 | HOMER | 0.95 | positive |
| g17232.t1 | MYOTROPHIN | 0.94 | positive |
| g12233.t1 | -- | 0.94 | positive |
| g12322.t1 | LEUCINE RICH REPEAT PROTEIN | 0.94 | positive |
| g11253.t1 | DYNEIN INTERMEDIATE CHAIN | 0.94 | positive |
| g35274.t1 | SARCOSINE DEHYDROGENASE-RELATED | 0.94 | positive |
| g15180.t1 | SERINE-THREONINE PROTEIN KINASE | 0.93 | positive |
| g19451.t1 | GLYCOGENIN SUBFAMILY MEMBER | 0.92 | positive |
| g8086.t1 | 5-HYDROXYTRYPTAMINE RECEPTOR | 0.88 | positive |
| g10570.t1 | POLYCYSTIN-1 | 0.83 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 407 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
