Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g2804.t1 | SELENOPROTEIN S | 1 | positive |
| g10583.t1 | SER/THR PROTEIN KINASE ULK4 | 0.96 | positive |
| g20387.t1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER | 0.96 | positive |
| g9872.t1 | RAB FAMILY | 0.96 | positive |
| g30975.t1 | PEPTIDYLPROLYL ISOMERASE | 0.96 | positive |
| g8970.t1 | CELL DIVISION CYCLE 16,23,27 | 0.96 | positive |
| g23168.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP7/14 | 0.96 | positive |
| g362.t1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN | 0.95 | positive |
| g7163.t1 | TRNA PSEUDOURIDINE SYNTHASE D | 0.95 | positive |
| g3345.t1 | 3-5 EXONUCLEASE | 0.95 | positive |
| g31302.t1 | MICROSPHERULE PROTEIN 1 | 0.95 | positive |
| g4725.t1 | PYM PROTEIN | 0.95 | positive |
| g6276.t1 | CELL DIVISION PROTEIN KINASE | 0.95 | positive |
| g1258.t1 | TESTIS DEVELOPMENT PROTEIN PRTD | 0.95 | positive |
| g2902.t1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 0.94 | positive |
| g3598.t1 | ETS | 0.94 | positive |
| g32096.t1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4 | 0.94 | positive |
| g24986.t1 | RIBONUCLEASE Y | 0.94 | positive |
| g2921.t1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS | 0.94 | positive |
| g629.t1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 | 0.94 | positive |
| g10197.t1 | INHIBITOR OF APOPTOSIS | 0.94 | positive |
| g35457.t1 | RNA HELICASE | 0.94 | positive |
| g12373.t1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 0.94 | positive |
| g9692.t1 | MITOGEN-ACTIVATED PROTEIN KINASE | 0.94 | positive |
| g3599.t1 | -- | 0.93 | positive |
| g15232.t1 | BTB/POZ DOMAIN-CONTAINING | 0.93 | positive |
| g25008.t1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL | 0.93 | positive |
| g6034.t1 | UNCHARACTERIZED | 0.93 | positive |
| g560.t1 | -- | 0.93 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 164 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
