Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g28278.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g28278.t1

Gene ID	Description	PCC	Relationship
g28278.t1	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	1	positive
g13349.t1	HEAT SHOCK 70 KDA PROTEIN 14	0.93	positive
g27566.t1	--	0.93	positive
g2032.t1	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	0.93	positive
g8588.t1	--	0.93	positive
g31427.t1	AGAP008221-PA	0.92	positive
g1012.t1	VANG-LIKE PROTEIN	0.92	positive
g11874.t1	CYCLINS	0.92	positive
g129.t1	OLIGOPEPTIDE TRANSPORTER-RELATED	0.92	positive
g27695.t1	AMINOTRANSFERASE	0.92	positive
g11918.t1	AAA DOMAIN-CONTAINING	0.92	positive
g10507.t1	ECTO-NOX DISULFIDE-THIOL EXCHANGER	0.92	positive
g32641.t1	--	0.92	positive
g27240.t1	DENN DOMAIN-CONTAINING	0.92	positive
g33640.t1	--	0.91	positive
g9811.t1	LYMPHOID-SPECIFIC HELICASE	0.91	positive
g28285.t1	DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE	0.91	positive
g15453.t1	TNF RECEPTOR ASSOCIATED FACTOR	0.91	positive
g18638.t1	TRANSMEMBRANE GTPASE FZO1	0.89	positive
g26776.t1	BONUS, ISOFORM C-RELATED	0.85	positive
g14783.t1	FATTY ACID ACYL TRANSFERASE-RELATED	0.78	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 82 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g32641.t1 g9811.t1
g11874.t1 g10507.t1
g27695.t1 g8588.t1
g27695.t1 g1012.t1
g32641.t1 g11874.t1
g8588.t1 g129.t1
g27566.t1 g15453.t1
g11874.t1 g9811.t1
g31427.t1 g8588.t1
g27695.t1 g27566.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.