Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g28362.t1 | TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN | 1 | positive |
| g18097.t1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN | 0.99 | positive |
| g16656.t1 | ATP-DEPENDENT DNA HELICASE | 0.99 | positive |
| g30584.t1 | M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25 | 0.99 | positive |
| g6391.t1 | SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED | 0.99 | positive |
| g2438.t1 | CONDENSIN | 0.98 | positive |
| g6804.t1 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR | 0.98 | positive |
| g32301.t1 | CAMK FAMILY PROTEIN KINASE | 0.98 | positive |
| g13288.t1 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED | 0.98 | positive |
| g11881.t1 | GMP REDUCTASE | 0.98 | positive |
| g5170.t1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III | 0.98 | positive |
| g29812.t1 | -- | 0.98 | positive |
| g14338.t1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY | 0.98 | positive |
| g34978.t1 | OS05G0300700 PROTEIN | 0.98 | positive |
| g27426.t1 | EIF4G DOMAIN PROTEIN | 0.98 | positive |
| g13256.t1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY | 0.98 | positive |
| g10551.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED | 0.98 | positive |
| g2155.t1 | L-ASPARAGINASE | 0.97 | positive |
| g16208.t1 | RPA-INTERACTING PROTEIN RPAIN | 0.97 | positive |
| g5113.t1 | SEPTIN | 0.97 | positive |
| g29193.t1 | DNA-BINDING PROTEIN SATB FAMILY MEMBER | 0.97 | positive |
| g21250.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 14 | 0.97 | positive |
| g28460.t1 | LD21662P | 0.97 | positive |
| g23506.t1 | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 0.97 | positive |
| g2598.t1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE | 0.97 | positive |
| g8722.t1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 | 0.97 | positive |
| g5709.t1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED | 0.97 | positive |
| g2473.t1 | STAC | 0.97 | positive |
| g2244.t1 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 | 0.97 | positive |
| g3571.t1 | DISCS LARGE | 0.97 | positive |
| g2556.t1 | SETA BINDING PROTEIN 1 | 0.97 | positive |
| g34185.t1 | -- | 0.97 | positive |
| g5062.t1 | FAMILY WITH SEQUENCE SIMILARITY 102 | 0.97 | positive |
| g3636.t1 | PHOSPHOHEXOMUTASE FAMILY MEMBER | 0.97 | positive |
| g1876.t1 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN | 0.97 | positive |
| g29178.t1 | DNA-BINDING PROTEIN SATB FAMILY MEMBER | 0.97 | positive |
| g2886.t1 | CYCLINS | 0.96 | positive |
| g29585.t1 | DIMETHYLANILINE MONOOXYGENASE | 0.96 | positive |
| g12493.t1 | UNCHARACTERIZED | 0.96 | positive |
| g7174.t1 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER | 0.96 | positive |
| g938.t1 | FLAP ENDONUCLEASE FAMILY MEMBER | 0.96 | positive |
| g15768.t1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 0.96 | positive |
| g20756.t1 | RETICULOCALBIN | 0.95 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 347 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
