Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g29102.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g29102.t1

Gene ID	Description	PCC	Relationship
g29102.t1	OVOCHYMASE-RELATED	1	positive
g3976.t1	PA-PL1 PHOSPHOLIPASE FAMILY	0.96	positive
g3595.t1	ATP-BINDING CASSETTE SUB-FAMILY C	0.96	positive
g28139.t1	HERMANSKY-PUDLAK SYNDROME PROTEIN 1	0.95	positive
g7308.t1	HEAT SHOCK PROTEIN 70KDA	0.95	positive
g33192.t1	HEAT SHOCK PROTEIN 70KDA	0.94	positive
g15899.t1	RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN	0.94	positive
g29635.t1	IMPORTIN-7, 8, 11	0.94	positive
g20291.t1	CAMK FAMILY PROTEIN KINASE	0.93	positive
g22797.t1	GLUTAMINE-TRNA LIGASE	0.93	positive
g7306.t1	HEAT SHOCK PROTEIN 70KDA	0.93	positive
g20290.t1	--	0.93	positive
g13381.t1	RAS GTPASE-RELATED	0.93	positive
g22200.t1	AAA DOMAIN-CONTAINING	0.93	positive
g8579.t1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	0.93	positive
g27565.t1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	0.93	positive
g5107.t1	TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER	0.92	positive
g7453.t1	E3 UBIQUITIN-PROTEIN LIGASE UBR5	0.92	positive
g13209.t1	MASK PROTEIN	0.92	positive
g16595.t1	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	0.92	positive
g27088.t1	--	0.92	positive
g11151.t1	PEPTIDASE M20	0.92	positive
g27424.t1	RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE	0.92	positive
g22352.t1	UNCHARACTERIZED	0.92	positive
g4611.t1	SORTING NEXIN	0.92	positive
g6252.t1	AMINE OXIDASE	0.92	positive
g6599.t1	TAXILIN	0.91	positive
g27060.t1	TRANSCRIPTION INITIATION FACTOR TFIID	0.91	positive
g5845.t1	N-ACETYLGALACTOSAMINYLTRANSFERASE	0.91	positive
g5458.t1	TNF RECEPTOR ASSOCIATED FACTOR	0.91	positive
g16803.t1	--	0.91	positive
g29433.t1	--	0.90	positive
g21856.t1	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	0.90	positive
g19939.t1	RIBOSOME BIOGENESIS PROTEIN	0.89	positive
g609.t1	AGAP011099-PA	0.88	positive
g9728.t1	--	0.87	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 193 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g29102.t1 g3976.t1
g33192.t1 g29635.t1
g33192.t1 g7308.t1
g13209.t1 g3976.t1
g29635.t1 g7308.t1
g29102.t1 g3595.t1
g13381.t1 g3595.t1
g3976.t1 g3595.t1
g20291.t1 g13381.t1
g29635.t1 g3976.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.