Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g29577.t1 | NINEIN | 1 | positive |
| g7240.t1 | -- | 0.95 | positive |
| g14084.t1 | CYTOCHROME P450 26 | 0.95 | positive |
| g3887.t1 | F-BOX ONLY PROTEIN 15 | 0.94 | positive |
| g4695.t1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN | 0.94 | positive |
| g11575.t1 | TRANSPORTIN 3 AND IMPORTIN 13 | 0.94 | positive |
| g4051.t1 | TNF RECEPTOR ASSOCIATED FACTOR | 0.94 | positive |
| g27594.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED | 0.94 | positive |
| g5653.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 | 0.94 | positive |
| g22684.t1 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | 0.94 | positive |
| g9391.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 0.94 | positive |
| g8236.t1 | BETA-CAROTENE DIOXYGENASE | 0.94 | positive |
| g13360.t1 | PRESEQUENCE PROTEASE | 0.93 | positive |
| g29995.t1 | CAMK FAMILY PROTEIN KINASE | 0.93 | positive |
| g25373.t1 | -- | 0.93 | positive |
| g35156.t1 | C2 DOMAIN-CONTAINING PROTEIN 5 | 0.93 | positive |
| g10733.t1 | GRB10 INTERACTING GYF PROTEIN | 0.93 | positive |
| g16775.t1 | SHC TRANSFORMING PROTEIN | 0.92 | positive |
| g14687.t1 | FIDIPIDINE | 0.92 | positive |
| g1618.t1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING | 0.92 | positive |
| g20291.t1 | CAMK FAMILY PROTEIN KINASE | 0.92 | positive |
| g29576.t1 | -- | 0.92 | positive |
| g29722.t1 | GLUTAMINE-TRNA LIGASE | 0.91 | positive |
| g6585.t1 | -- | 0.89 | positive |
| g14041.t1 | IMPORTIN BETA | 0.89 | positive |
| g14044.t1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED | 0.82 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 82 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
