Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3064.t1 | ELONGATION FACTOR 1-GAMMA | 1 | positive |
| g23362.t1 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED | 0.97 | positive |
| g5117.t1 | RIBOSOMAL PROTEIN S9 | 0.96 | positive |
| g16901.t1 | ATP SYNTHASE | 0.96 | positive |
| g27996.t1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED | 0.96 | positive |
| g13050.t1 | RESPIRATORY NITRATE REDUCTASE | 0.96 | positive |
| g1020.t1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT | 0.96 | positive |
| g1228.t1 | -- | 0.95 | positive |
| g10067.t1 | -- | 0.95 | positive |
| g14945.t1 | CALBINDIN | 0.95 | positive |
| g1039.t1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 0.95 | positive |
| g17209.t1 | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE | 0.95 | positive |
| g15394.t1 | PROTEIN CBG20488 | 0.95 | positive |
| g5096.t1 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED | 0.95 | positive |
| g11027.t1 | ENOLASE | 0.95 | positive |
| g2077.t1 | OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC | 0.95 | positive |
| g3858.t1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN | 0.94 | positive |
| g823.t1 | GLUTATHIONE S-TRANSFERASE KAPPA | 0.94 | positive |
| g27875.t1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER | 0.94 | positive |
| g27495.t1 | MYOSIN LIGHT CHAIN 1, 3 | 0.94 | positive |
| g23006.t1 | ARP2/3 COMPLEX 34 KDA SUBUNIT | 0.94 | positive |
| g4860.t1 | COPINE | 0.94 | positive |
| g25096.t1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 | 0.94 | positive |
| g12369.t1 | ZGC:101858 | 0.94 | positive |
| g20222.t1 | ARGINYL-TRNA SYNTHETASE | 0.94 | positive |
| g34967.t1 | GTP-BINDING PROTEIN-RELATED | 0.94 | positive |
| g32760.t1 | OS-9-RELATED | 0.94 | positive |
| g15083.t1 | NUCLEOSIDE DIPHOSPHATE KINASE | 0.94 | positive |
| g35080.t1 | TUBERIN | 0.94 | positive |
| g10447.t1 | FRINGE-RELATED | 0.93 | positive |
| g341.t1 | NOTCH LIGAND FAMILY MEMBER | 0.93 | positive |
| g14773.t1 | RTDR1 | 0.93 | positive |
| g3269.t1 | DEHYDROGENASE RELATED | 0.93 | positive |
| g35048.t1 | ENOYL-COA HYDRATASE-RELATED | 0.93 | positive |
| g17430.t1 | SELENOPROTEIN K | 0.93 | positive |
| g20596.t1 | ACYL CARRIER PROTEIN | 0.93 | positive |
| g3902.t1 | LEUCINE AMINOPEPTIDASE-RELATED | 0.93 | positive |
| g30188.t1 | TRNA-SPECIFIC ADENOSINE DEAMINASE 1 | 0.93 | positive |
| g6813.t1 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED | 0.92 | positive |
| g27172.t1 | -- | 0.92 | positive |
| g12754.t1 | GLR0591 PROTEIN | 0.92 | positive |
| g123.t1 | GUANYLYL CYCLASE | 0.92 | positive |
| g13258.t1 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 1 | 0.90 | positive |
| g430.t1 | DYNEIN REGULATORY COMPLEX PROTEIN 8 | 0.89 | positive |
| g26038.t1 | RIBOPHORIN II | 0.89 | positive |
| g5287.t1 | NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 3 | 0.87 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 333 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
