Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g308.t1 | CENTROSOMAL PROTEIN KIZUNA | 1 | positive |
| g5217.t1 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 0.93 | positive |
| g6625.t1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN | 0.92 | positive |
| g21382.t1 | DNA2/NAM7 HELICASE FAMILY | 0.92 | positive |
| g5617.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | 0.92 | positive |
| g16274.t1 | POLY [ADP-RIBOSE] POLYMERASE | 0.91 | positive |
| g21193.t1 | ZINC FINGER, ZZ TYPE | 0.91 | positive |
| g11304.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.91 | positive |
| g23617.t1 | -- | 0.91 | positive |
| g20115.t1 | UNCHARACTERIZED | 0.91 | positive |
| g14350.t1 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN | 0.91 | positive |
| g23371.t1 | -- | 0.90 | positive |
| g10316.t1 | -- | 0.90 | positive |
| g35594.t1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT | 0.90 | positive |
| g30116.t1 | G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP | 0.90 | positive |
| g14967.t1 | MRNA-CAPPING ENZYME | 0.90 | positive |
| g23726.t1 | FACIOGENITAL DYSPLASIA PROTEIN | 0.89 | positive |
| g5643.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.89 | positive |
| g17991.t1 | UNCHARACTERIZED | 0.89 | positive |
| g13534.t1 | AHD DOMAIN-CONTAINING PROTEIN | 0.88 | positive |
| g3272.t1 | UROCANATE HYDRATASE | 0.88 | positive |
| g6764.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 0.88 | positive |
| g34910.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.87 | positive |
| g8895.t1 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS | 0.87 | positive |
| g23704.t1 | SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED | 0.87 | positive |
| g20114.t1 | -- | 0.87 | positive |
| g10555.t1 | NUCLEOPORIN NUP37 P37 -RELATED | 0.86 | positive |
| g17798.t1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE | 0.85 | positive |
| g3206.t1 | -- | 0.85 | positive |
| g23458.t1 | -- | 0.85 | positive |
| g19309.t1 | -- | 0.84 | positive |
| g31796.t1 | GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING | 0.79 | positive |
| g22671.t1 | -- | 0.71 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 140 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
