Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g30892.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g30892.t1
Gene ID Description PCC Relationship
g30892.t1PHYTOENE DESATURASE1positive
g16521.t1PHYTOENE DESATURASE0.99positive
g27318.t1LIPOXYGENASE0.99positive
g2952.t1CENTROSOMAL PROTEIN 20.98positive
g14033.t1MITOGEN-ACTIVATED PROTEIN KINASE0.98positive
g8444.t1ADENOMATOSIS POLYPOSIS COLI DOWN-REGULATED 10.98positive
g15700.t1CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 40.98positive
g14007.t1BTB/POZ DOMAIN-CONTAINING0.98positive
g1556.t1ENDOGLIN/TGF-BETA RECEPTOR TYPE III0.98positive
g27223.t1--0.98positive
g6902.t1HOMEOBOX PROTEIN MSX0.98positive
g4775.t1DYNEIN INTERMEDIATE CHAIN0.98positive
g1040.t1RAP GTPASE-ACTIVATING PROTEIN0.98positive
g27869.t1SRCR DOMAIN-CONTAINING PROTEIN0.98positive
g16843.t1LETHAL 2 GIANT LARVAE PROTEIN0.98positive
g15521.t1CALCIUM HOMEOSTASIS MODULATOR PROTEIN0.98positive
g2830.t1N-ACETYLGLUCOSAMINYLTRANSFERASE VI0.98positive
g3871.t1MYOTROPHIN0.98positive
g4019.t1NETRIN/LAMININ-RELATED0.98positive
g22038.t1LEUCOKININ RECEPTOR-RELATED0.98positive
g5246.t1--0.98positive
g515.t1SRCR DOMAIN-CONTAINING PROTEIN0.98positive
g2936.t1CENTROSOMAL PROTEIN 20.98positive
g13062.t1SODIUM/CHLORIDE DEPENDENT TRANSPORTER0.98positive
g32425.t1--0.98positive
g10238.t1SUSHI DOMAIN-CONTAINING PROTEIN 10.98positive
g31443.t1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-10.97positive
g17627.t1SI:CH211-108C17.2-RELATED-RELATED0.97positive
g10502.t1POTASSIUM/PROTON ANTIPORTER-RELATED0.97positive
g3193.t1FRIZZLED0.97positive
g10188.t1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A0.97positive
g33163.t1--0.97positive
g27713.t1--0.97positive
g14985.t1EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C0.97positive
g601.t1TETRATRICOPEPTIDE REPEAT PROTEIN 130.97positive
g14836.t1TRANSPOSASE, PUTATIVE-RELATED0.96positive
g23606.t1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED0.95positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 207 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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