Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3095.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED | 1 | positive |
| g11711.t1 | BATTENIN | 0.99 | positive |
| g27357.t1 | - | 0.98 | positive |
| g9738.t1 | GTP-BINDING PROTEIN ALPHA SUBUNIT | 0.98 | positive |
| g12755.t1 | -- | 0.98 | positive |
| g16839.t1 | WD REPEAT AND COILED-COIL-CONTAINING PROTEIN | 0.98 | positive |
| g17147.t1 | -- | 0.98 | positive |
| g11633.t1 | TRANSCRIPTIONAL ADAPTER 1 | 0.98 | positive |
| g15363.t1 | RIBONUCLEASE | 0.98 | positive |
| g1835.t1 | ANOCTAMIN | 0.98 | positive |
| g20275.t1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 | 0.97 | positive |
| g5277.t1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD | 0.97 | positive |
| g33312.t1 | KELCH PROTEIN | 0.97 | positive |
| g4804.t1 | FACTOR VIII-ASSOCIATED GENE 1 | 0.97 | positive |
| g11138.t1 | BANK1/PIK3AP1 FAMILY MEMBER | 0.97 | positive |
| g16482.t1 | S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED | 0.97 | positive |
| g22068.t1 | BONUS, ISOFORM C-RELATED | 0.97 | positive |
| g11552.t1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA | 0.97 | positive |
| g27270.t1 | BOULE-RELATED | 0.97 | positive |
| g11776.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.97 | positive |
| g12333.t1 | SI:DKEY-16J16.4 | 0.97 | positive |
| g11629.t1 | KNIRPS-RELATED PROTEIN-RELATED | 0.97 | positive |
| g6207.t1 | -- | 0.97 | positive |
| g2562.t1 | - | 0.97 | positive |
| g12295.t1 | POLYCOMB GROUP PROTEIN | 0.97 | positive |
| g16919.t1 | ES-2 PROTEIN - RELATED | 0.97 | positive |
| g6430.t1 | SWAP-70 RECOMBINASE | 0.97 | positive |
| g35727.t1 | UNCHARACTERIZED | 0.97 | positive |
| g34190.t1 | -- | 0.97 | positive |
| g9511.t1 | -- | 0.97 | positive |
| g878.t1 | CENTROMERE PROTEIN P | 0.96 | positive |
| g13812.t1 | RETINOBLASTOMA BINDING PROTEIN 8 | 0.96 | positive |
| g4500.t1 | RIKEN CDNA 9930021J03 GENE | 0.96 | positive |
| g18371.t1 | DELTEX-RELATED | 0.96 | positive |
| g15757.t1 | UNCHARACTERIZED | 0.96 | positive |
| g22788.t1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 0.96 | positive |
| g23745.t1 | LD33804P | 0.96 | positive |
| g30205.t1 | RAB GDP/GTP EXCHANGE FACTOR | 0.96 | positive |
| g1978.t1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER | 0.96 | positive |
| g2354.t1 | -- | 0.96 | positive |
| g9295.t1 | STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED | 0.96 | positive |
| g12364.t1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 | 0.96 | positive |
| g17146.t1 | SORTING NEXIN-29-RELATED | 0.95 | positive |
| g28159.t1 | OS05G0565100 PROTEIN | 0.95 | positive |
| g18946.t1 | -- | 0.95 | positive |
| g22353.t1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED | 0.95 | positive |
| g4552.t1 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 | 0.95 | positive |
| g1032.t1 | ALCOHOL DEHYDROGENASE | 0.94 | positive |
| g17945.t1 | -- | 0.94 | positive |
| g32022.t1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | 0.94 | positive |
| g3313.t1 | -- | 0.94 | positive |
| g7497.t1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED | 0.94 | positive |
| g3633.t1 | LEUCOKININ RECEPTOR-RELATED | 0.94 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 447 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
