Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g3181.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g3181.t1
Gene ID Description PCC Relationship
g3181.t1PHOSPHOLIPID SCRAMBLASE-RELATED1positive
g16168.t1LEUCINE RICH REPEAT FAMILY PROTEIN1.00positive
g11892.t1WD-40 REPEAT PROTEIN0.99positive
g12225.t1--0.99positive
g16169.t1--0.99positive
g19809.t1NUCLEOTIDE KINASE0.99positive
g27024.t1--0.99positive
g8036.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 540.99positive
g2424.t1BARDET-BIEDL SYNDROME 7 PROTEIN0.99positive
g28452.t1MALE FERTILITY FACTOR KL50.99positive
g2611.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 690.99positive
g867.t1--0.99positive
g12064.t1SAM DOMAIN-CONTAINING PROTEIN-RELATED0.99positive
g12224.t1--0.99positive
g2882.t1PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE0.99positive
g1079.t1UNCHARACTERIZED0.99positive
g7597.t1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED0.99positive
g35439.t1--0.99positive
g18372.t1COILED-COIL DOMAIN-CONTAINING 74A0.99positive
g6874.t1CELL DIVISION PROTEIN KINASE0.99positive
g520.t1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED0.99positive
g34237.t1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE0.99positive
g9937.t1--0.99positive
g5914.t1LEUCOKININ RECEPTOR-RELATED0.99positive
g11109.t1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN0.99positive
g10202.t1--0.99positive
g8530.t1--0.99positive
g26999.t1UNCHARACTERIZED0.99positive
g343.t1PECANEX0.99positive
g8487.t1TESTIS-SPECIFIC GENE 13 PROTEIN0.99positive
g4073.t1TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG0.99positive
g5198.t1--0.98positive
g12769.t1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED0.98positive
g11816.t1BETA TRANSDUCIN-RELATED PROTEIN0.97positive
g28247.t1FIBROBLAST GROWTH FACTOR0.91positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 194 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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