Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3207.t1 | -- | 1 | positive |
| g27171.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 0.93 | positive |
| g17456.t1 | BCS1 AAA-TYPE ATPASE | 0.92 | positive |
| g13387.t1 | ATF6, ISOFORM C | 0.92 | positive |
| g13688.t1 | UNCHARACTERIZED | 0.91 | positive |
| g2523.t1 | MRNA EXPORT FACTOR AND BUB3 | 0.90 | positive |
| g1399.t1 | TGF-BETA FAMILY | 0.90 | positive |
| g1782.t1 | PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1 | 0.89 | positive |
| g5047.t1 | C2H2 ZINC FINGER CGI-62-RELATED | 0.89 | positive |
| g305.t1 | -- | 0.89 | positive |
| g8895.t1 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS | 0.89 | positive |
| g3898.t1 | MDM2-BINDING PROTEIN | 0.88 | positive |
| g1541.t1 | UNCHARACTERIZED | 0.88 | positive |
| g4966.t1 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED | 0.88 | positive |
| g27813.t1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 | 0.88 | positive |
| g9919.t1 | SOLUTE CARRIER FAMILY 25 | 0.88 | positive |
| g5643.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.88 | positive |
| g35003.t1 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED | 0.87 | positive |
| g2446.t1 | -- | 0.87 | positive |
| g7922.t1 | RP42 RELATED | 0.87 | positive |
| g28265.t1 | SER/THR-PROTEIN KINASE RIO2 | 0.86 | positive |
| g27760.t1 | -- | 0.86 | positive |
| g1840.t1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV | 0.86 | positive |
| g9920.t1 | -- | 0.86 | positive |
| g13187.t1 | CENTAURIN/ARF | 0.85 | positive |
| g30567.t1 | BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED | 0.85 | positive |
| g14086.t1 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE | 0.85 | positive |
| g6221.t1 | CENTROSOMAL PROTEIN OF 131 KDA | 0.84 | positive |
| g20116.t1 | UNCHARACTERIZED | 0.84 | positive |
| g12631.t1 | -- | 0.80 | positive |
| g18161.t1 | VILLIN | 0.80 | positive |
| g18933.t1 | -- | 0.80 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 174 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
