Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g32416.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 | 1 | positive |
| g22787.t1 | ROTATIN | 0.97 | positive |
| g14195.t1 | V-TYPE ATP SYNTHASE SUBUNIT D | 0.97 | positive |
| g7552.t1 | RHO-TYPE GTPASE ACTIVATING PROTEIN | 0.96 | positive |
| g3592.t1 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA | 0.96 | positive |
| g24339.t1 | PRE-MRNA SPLICING FACTOR | 0.96 | positive |
| g14500.t1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 0.96 | positive |
| g35490.t1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | 0.96 | positive |
| g11298.t1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG | 0.95 | positive |
| g27944.t1 | CENTROMERE/KINETOCHORE PROTEIN ZW10 | 0.95 | positive |
| g7350.t1 | PERICENTRIN-LIKE PROTEIN, ISOFORM F | 0.95 | positive |
| g20194.t1 | TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1 | 0.95 | positive |
| g23603.t1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO | 0.95 | positive |
| g12582.t1 | NUCLEOREDOXIN | 0.95 | positive |
| g12735.t1 | GOLGI MEMBRANE PROTEIN YIP1 | 0.95 | positive |
| g29170.t1 | GTP-BINDING PROTEIN-RELATED | 0.95 | positive |
| g2437.t1 | TRANSMEMBRANE PROTEIN 101 | 0.95 | positive |
| g12563.t1 | NUCLEAR PORE COMPLEX PROTEIN NUP205 | 0.95 | positive |
| g5255.t1 | ACTIN | 0.94 | positive |
| g18490.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN | 0.94 | positive |
| g14797.t1 | ATP-BINDING TRANSPORT PROTEIN-RELATED | 0.94 | positive |
| g27629.t1 | LD35087P | 0.94 | positive |
| g34679.t1 | COLLAGEN ALPHA | 0.94 | positive |
| g9273.t1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 0.94 | positive |
| g4697.t1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | 0.94 | positive |
| g12970.t1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN | 0.93 | positive |
| g9379.t1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 | 0.93 | positive |
| g2622.t1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 0.93 | positive |
| g10450.t1 | WD REPEAT-CONTAINING PROTEIN POP1 | 0.93 | positive |
| g10821.t1 | -- | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 142 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
