Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g32435.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g32435.t1

Gene ID	Description	PCC	Relationship
g32435.t1	ENOLASE (DUF1399)	1	positive
g11979.t1	--	0.92	positive
g18077.t1	PROTEIN CBG26694	0.90	positive
g23632.t1	RETROTRANSPOSON	0.89	positive
g16750.t1	--	0.89	positive
g21474.t1	--	0.86	positive
g33326.t1	--	0.86	positive
g23986.t1	L1 TRANSPOSABLE ELEMENT-RELATED	0.85	positive
g21978.t1	MYND-TYPE DOMAIN-CONTAINING PROTEIN	0.85	positive
g32712.t1	--	0.85	positive
g2380.t1	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	0.85	positive
g15071.t1	PROTEIN CBG26694	0.84	positive
g33497.t1	RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN	0.83	positive
g9761.t1	RETROTRANSPOSON	0.83	positive
g1409.t1	--	0.83	positive
g28671.t1	UNCHARACTERIZED	0.83	positive
g16223.t1	--	0.83	positive
g35383.t1	--	0.82	positive
g23181.t1	--	0.82	positive
g12140.t1	C2H2-TYPE DOMAIN-CONTAINING PROTEIN	0.82	positive
g32515.t1	REVERSE TRANSCRIPTASES	0.81	positive
g23214.t1	--	0.81	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 64 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g23632.t1 g15071.t1
g21978.t1 g18077.t1
g23632.t1 g18077.t1
g23632.t1 g21978.t1
g21978.t1 g15071.t1
g32435.t1 g11979.t1
g18077.t1 g11979.t1
g23632.t1 g11979.t1
g33326.t1 g1409.t1
g32435.t1 g18077.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.