Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3308.t1 | UBIQUITIN-CONJUGATING ENZYME E2 | 1 | positive |
| g29747.t1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 | 0.93 | positive |
| g10959.t1 | -- | 0.93 | positive |
| g9692.t1 | MITOGEN-ACTIVATED PROTEIN KINASE | 0.92 | positive |
| g27505.t1 | ORF PROTEIN-RELATED | 0.91 | positive |
| g25095.t1 | SPLICING FACTOR, ARGININE/SERINE-RICH 19 | 0.91 | positive |
| g16309.t1 | GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1 | 0.90 | positive |
| g13995.t1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 | 0.90 | positive |
| g120.t1 | CHONDROITIN SYNTHASE | 0.90 | positive |
| g12022.t1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED | 0.90 | positive |
| g25503.t1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 | 0.89 | positive |
| g124.t1 | MICROFIBRIL-ASSOCIATED PROTEIN | 0.89 | positive |
| g35041.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED | 0.88 | positive |
| g15355.t1 | UBIQUITIN-ACTIVATING ENZYME E1 | 0.88 | positive |
| g17994.t1 | -- | 0.88 | positive |
| g22780.t1 | -- | 0.86 | positive |
| g10677.t1 | UNCHARACTERIZED | 0.85 | positive |
| g12672.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 0.81 | positive |
| g30852.t1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 | 0.80 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 49 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
