Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3404.t1 | CEREBRAL PROTEIN-11-RELATED | 1 | positive |
| g27187.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.98 | positive |
| g6430.t1 | SWAP-70 RECOMBINASE | 0.98 | positive |
| g8719.t1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE | 0.97 | positive |
| g16204.t1 | GAMETOGENETIN-BINDING PROTEIN 2 | 0.97 | positive |
| g10331.t1 | DEUBIQUITINATING PROTEIN VCIP135 | 0.97 | positive |
| g25542.t1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE | 0.97 | positive |
| g29384.t1 | -- | 0.97 | positive |
| g4160.t1 | -- | 0.97 | positive |
| g10641.t1 | DYNEIN LIGHT INTERMEDIATE CHAIN | 0.97 | positive |
| g19246.t1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A | 0.97 | positive |
| g5326.t1 | D-GLUCURONYL C5-EPIMERASE | 0.96 | positive |
| g27755.t1 | HOMER | 0.96 | positive |
| g633.t1 | MOLTING PROTEIN MLT-4 | 0.96 | positive |
| g22100.t1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN | 0.96 | positive |
| g5818.t1 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN | 0.96 | positive |
| g16763.t1 | -- | 0.96 | positive |
| g20120.t1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE | 0.96 | positive |
| g35990.t1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 | 0.96 | positive |
| g27754.t1 | HOMER | 0.96 | positive |
| g4500.t1 | RIKEN CDNA 9930021J03 GENE | 0.96 | positive |
| g16764.t1 | YY1 ASSOCIATED PROTEIN-RELATED | 0.96 | positive |
| g19336.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.96 | positive |
| g6210.t1 | METHYLMALONYL-COA MUTASE | 0.96 | positive |
| g6346.t1 | MERLIN/MOESIN/EZRIN/RADIXIN | 0.96 | positive |
| g12341.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.96 | positive |
| g11254.t1 | SPINSTER | 0.96 | positive |
| g2392.t1 | IP22168P | 0.96 | positive |
| g15081.t1 | - | 0.96 | positive |
| g9525.t1 | - | 0.96 | positive |
| g2757.t1 | -- | 0.95 | positive |
| g1424.t1 | -- | 0.95 | positive |
| g2179.t1 | NUCLEOPHOSMIN | 0.95 | positive |
| g13129.t1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g3586.t1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 | 0.95 | positive |
| g8844.t1 | KINESIN-LIKE PROTEIN KIN-12D | 0.95 | positive |
| g13588.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR | 0.95 | positive |
| g6432.t1 | SWAP-70 RECOMBINASE | 0.95 | positive |
| g8962.t1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g572.t1 | ACTIN | 0.95 | positive |
| g23743.t1 | LD33804P | 0.95 | positive |
| g27362.t1 | ANDROGEN-INDUCED PROTEIN 1-RELATED | 0.95 | positive |
| g23297.t1 | PROTEIN DISPATCHED-RELATED | 0.94 | positive |
| g27302.t1 | GLYCERATE KINASE | 0.94 | positive |
| g13201.t1 | CYTOCHROME P450 FAMILY 4 | 0.94 | positive |
| g3620.t1 | CARBONIC ANHYDRASE | 0.94 | positive |
| g9737.t1 | -- | 0.94 | positive |
| g33089.t1 | DNA2/NAM7 HELICASE FAMILY | 0.94 | positive |
| g7338.t1 | -- | 0.94 | positive |
| g22154.t1 | N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1 | 0.93 | positive |
| g2960.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 12 | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 316 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
