Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g3430.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g3430.t1

Gene ID	Description	PCC	Relationship
g3430.t1	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15	1	positive
g35246.t1	CASEIN KINASE II SUBUNIT ALPHA	0.94	positive
g24959.t1	--	0.93	positive
g2339.t1	OBG GTPASE FAMILY	0.93	positive
g33033.t1	DNA TOPOISOMERASE/GYRASE	0.93	positive
g14211.t1	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	0.92	positive
g18374.t1	PRE-MRNA-PROCESSING FACTOR 19	0.92	positive
g11307.t1	--	0.91	positive
g27193.t1	RIBOSOMAL PROTEIN L19	0.91	positive
g1868.t1	UNCHARACTERIZED	0.91	positive
g18365.t1	UNCHARACTERIZED	0.91	positive
g20828.t1	CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED	0.90	positive
g15355.t1	UBIQUITIN-ACTIVATING ENZYME E1	0.90	positive
g8031.t1	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	0.90	positive
g10086.t1	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	0.90	positive
g21887.t1	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	0.90	positive
g17462.t1	TNF RECEPTOR ASSOCIATED FACTOR	0.89	positive
g9792.t1	--	0.88	positive
g20659.t1	DNA TOPOISOMERASE/GYRASE	0.88	positive
g10222.t1	COILED-COIL DOMAIN-CONTAINING PROTEIN 24	0.88	positive
g18564.t1	L1 TRANSPOSABLE ELEMENT-RELATED	0.88	positive
g31854.t1	SMALL MEMBRANE PROTEIN-RELATED	0.87	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 85 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g35246.t1 g20828.t1
g18374.t1 g14211.t1
g18374.t1 g10086.t1
g35246.t1 g27193.t1
g14211.t1 g10086.t1
g33033.t1 g24959.t1
g18365.t1 g11307.t1
g21887.t1 g14211.t1
g27193.t1 g21887.t1
g27193.t1 g2339.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.