Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g34939.t1
Co-expression Network View
Network Legend
Yellow: Query proteins
Green: Interaction proteins
Pink line: Own interaction + positive co-expression
Blue line: Own interaction + negative co-expression
Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.
📋 View Detailed Network Information
Co-expressed Genes of g34939.t1
Gene ID Description PCC Relationship
g34939.t1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS1positive
g24241.t1TETRASPANIN0.98positive
g2063.t1COLLAGEN ALPHA0.96positive
g27103.t1G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN0.95positive
g35880.t1TUMOR NECROSIS FACTOR RECEPTOR0.95positive
g8495.t1SERINE/THREONINE-PROTEIN KINASE0.95positive
g3564.t1--0.95positive
g6895.t14.1 G PROTEIN0.94positive
g13231.t1TRANSPOSASE, PUTATIVE-RELATED0.94positive
g13173.t1RETROTRANSPOSON0.94positive
g27458.t1NEUROPEPTIDE Y RECEPTOR0.94positive
g6502.t1CCCH ZINC FINGER/TIS11-RELATED0.94positive
g8958.t1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN0.94positive
g15093.t1NETRIN/LAMININ-RELATED0.94positive
g32196.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED0.94positive
g9194.t1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE0.94positive
g32121.t1TRANSPOSASE, PUTATIVE-RELATED0.93positive
g12975.t1CELL FATE DETERMINING PROTEIN MAB21-RELATED0.93positive
Further Analysis for Network Members
Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 36 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Gene pairs carried over (10)
Opens the ratio builder with these pairs already loaded. It computes the ratios, then hands both the pairs and the ratios to the network view in one step.
Or take the pairs by hand
Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
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