Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g388.t1 | ZINC FINGER PROTEIN-LIKE 1 | 1 | positive |
| g7613.t1 | CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26 | 0.93 | positive |
| g19813.t1 | -- | 0.92 | positive |
| g10479.t1 | GENETIC SUPPRESSOR ELEMENT 1 | 0.91 | positive |
| g35420.t1 | -- | 0.91 | positive |
| g21488.t1 | SKP1 | 0.90 | positive |
| g20671.t1 | PRE-MRNA SPLICING FACTOR PRP8 | 0.90 | positive |
| g2558.t1 | -- | 0.90 | positive |
| g18492.t1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE | 0.89 | positive |
| g20125.t1 | CCCH ZINGC FINGER | 0.88 | positive |
| g785.t1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2 | 0.88 | positive |
| g833.t1 | RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN | 0.88 | positive |
| g7313.t1 | HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED | 0.88 | positive |
| g4472.t1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN | 0.87 | positive |
| g27722.t1 | -- | 0.86 | positive |
| g8440.t1 | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 | 0.85 | positive |
| g6578.t1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 0.85 | positive |
| g14794.t1 | PRESEQUENCE TRANSLOCATED-ASSOCIATED MOTOR SUBUNIT PAM17, MITOCHONDRIAL | 0.85 | positive |
| g11404.t1 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN | 0.85 | positive |
| g21369.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 0.84 | positive |
| g3167.t1 | LD11652P | 0.81 | positive |
| g6469.t1 | LYSINE-SPECIFIC DEMETHYLASE | 0.81 | positive |
| g2467.t1 | NATURAL KILLER CELL-SPECIFIC ANTIGEN KLIP1 | 0.77 | positive |
| g10133.t1 | PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4 | 0.76 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 107 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
