Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3911.t1 | NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1 | 1 | positive |
| g34952.t1 | LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN | 0.96 | positive |
| g8332.t1 | CD59 GLYCOPROTEIN | 0.96 | positive |
| g2712.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 0.96 | positive |
| g396.t1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEINS-INTERACTING PROTEIN 1 GADD45GIP1 | 0.96 | positive |
| g12697.t1 | COATOMER SUBUNIT EPSILON | 0.96 | positive |
| g32162.t1 | METHANETHIOL OXIDASE | 0.95 | positive |
| g31853.t1 | METALLOPROTEASE TLDD | 0.95 | positive |
| g27744.t1 | -- | 0.95 | positive |
| g26069.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.95 | positive |
| g30449.t1 | TRANSLATION FACTOR | 0.95 | positive |
| g7593.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 0.95 | positive |
| g13771.t1 | -- | 0.95 | positive |
| g7181.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 0.95 | positive |
| g5588.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | 0.95 | positive |
| g13779.t1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 | 0.95 | positive |
| g27741.t1 | DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED | 0.94 | positive |
| g27963.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.94 | positive |
| g9854.t1 | PROTEIN C6ORF130 | 0.94 | positive |
| g15034.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.94 | positive |
| g12385.t1 | OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1 | 0.94 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 109 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
