Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g3983.t1 | KELCH PROTEIN | 1 | positive |
| g7212.t1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g28162.t1 | DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41 | 0.93 | positive |
| g1705.t1 | SYNDECAN | 0.93 | positive |
| g28086.t1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 | 0.93 | positive |
| g4897.t1 | CRUMBS FAMILY MEMBER | 0.93 | positive |
| g10492.t1 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED | 0.92 | positive |
| g6125.t1 | -- | 0.92 | positive |
| g14204.t1 | MYELIN TRANSCRIPTION FACTOR 1-RELATED | 0.92 | positive |
| g6655.t1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 0.92 | positive |
| g10554.t1 | OS02G0815200 PROTEIN | 0.92 | positive |
| g35781.t1 | MYOSIN HEAVY CHAIN, NON-MUSCLE | 0.91 | positive |
| g13997.t1 | -- | 0.91 | positive |
| g1918.t1 | BCL-2 RELATED | 0.91 | positive |
| g1170.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II | 0.91 | positive |
| g16627.t1 | EPSIN/ENT-RELATED | 0.91 | positive |
| g5687.t1 | PUR-TRANSCRIPTIONAL ACTIVATOR | 0.91 | positive |
| g3299.t1 | REGULATORY-ASSOCIATED PROTEIN OF MTOR | 0.91 | positive |
| g9960.t1 | EPH RECEPTOR A5 | 0.90 | positive |
| g5323.t1 | MULTICOPPER OXIDASE-RELATED | 0.90 | positive |
| g1295.t1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 | 0.90 | positive |
| g8996.t1 | FLOTILLIN-RELATED | 0.90 | positive |
| g8048.t1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 0.89 | positive |
| g28550.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 0.89 | positive |
| g13537.t1 | GLR0591 PROTEIN | 0.89 | positive |
| g7231.t1 | VESICULAR, OVEREXPRESSED IN CANCER, PROSURVIVAL PROTEIN 1 | 0.89 | positive |
| g32139.t1 | -- | 0.87 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 145 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
