Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g4161.t1 | MULTICOPPER OXIDASE-RELATED | 1 | positive |
| g4160.t1 | -- | 0.98 | positive |
| g20136.t1 | PHEROMONE SHUTDOWN PROTEIN | 0.97 | positive |
| g402.t1 | -- | 0.97 | positive |
| g6430.t1 | SWAP-70 RECOMBINASE | 0.97 | positive |
| g633.t1 | MOLTING PROTEIN MLT-4 | 0.97 | positive |
| g27687.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 17 | 0.97 | positive |
| g5251.t1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED | 0.97 | positive |
| g17147.t1 | -- | 0.96 | positive |
| g11138.t1 | BANK1/PIK3AP1 FAMILY MEMBER | 0.96 | positive |
| g27269.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g16764.t1 | YY1 ASSOCIATED PROTEIN-RELATED | 0.96 | positive |
| g16919.t1 | ES-2 PROTEIN - RELATED | 0.96 | positive |
| g5818.t1 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN | 0.96 | positive |
| g6432.t1 | SWAP-70 RECOMBINASE | 0.96 | positive |
| g22068.t1 | BONUS, ISOFORM C-RELATED | 0.96 | positive |
| g10331.t1 | DEUBIQUITINATING PROTEIN VCIP135 | 0.96 | positive |
| g28027.t1 | FI24210P1 | 0.96 | positive |
| g2000.t1 | -- | 0.96 | positive |
| g6505.t1 | NITRIC OXIDE SYNTHASE-RELATED | 0.96 | positive |
| g22100.t1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN | 0.96 | positive |
| g27095.t1 | RIBONUCLEASE | 0.95 | positive |
| g35378.t1 | -- | 0.95 | positive |
| g12882.t1 | NNMT/PNMT/TEMT FAMILY MEMBER | 0.95 | positive |
| g2191.t1 | RUBY-EYE2-LIKE PROTEIN | 0.95 | positive |
| g27303.t1 | DYSTROGLYCAN-RELATED | 0.95 | positive |
| g314.t1 | WD REPEAT-CONTAINING PROTEIN 27 | 0.95 | positive |
| g3318.t1 | -- | 0.95 | positive |
| g23610.t1 | UBIQUITIN THIOESTERASE | 0.95 | positive |
| g27755.t1 | HOMER | 0.95 | positive |
| g9525.t1 | - | 0.95 | positive |
| g2466.t1 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE | 0.95 | positive |
| g17146.t1 | SORTING NEXIN-29-RELATED | 0.94 | positive |
| g9039.t1 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 | 0.94 | positive |
| g23744.t1 | LD33804P | 0.94 | positive |
| g12318.t1 | CLASP | 0.94 | positive |
| g3658.t1 | SNF2/RAD54 FAMILY MEMBER | 0.93 | positive |
| g11408.t1 | -- | 0.93 | positive |
| g25459.t1 | -- | 0.93 | positive |
| g1976.t1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 245 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
