Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g4456.t1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE | 1 | positive |
| g34967.t1 | GTP-BINDING PROTEIN-RELATED | 0.95 | positive |
| g3269.t1 | DEHYDROGENASE RELATED | 0.95 | positive |
| g11027.t1 | ENOLASE | 0.95 | positive |
| g35048.t1 | ENOYL-COA HYDRATASE-RELATED | 0.95 | positive |
| g14981.t1 | ANTIGEN MLAA-22-RELATED | 0.94 | positive |
| g12754.t1 | GLR0591 PROTEIN | 0.94 | positive |
| g27862.t1 | DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 | 0.94 | positive |
| g10208.t1 | CORTACTIN AND DREBRIN | 0.94 | positive |
| g15394.t1 | PROTEIN CBG20488 | 0.94 | positive |
| g27128.t1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR | 0.94 | positive |
| g24767.t1 | -- | 0.94 | positive |
| g27964.t1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN | 0.93 | positive |
| g4960.t1 | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN | 0.93 | positive |
| g341.t1 | NOTCH LIGAND FAMILY MEMBER | 0.93 | positive |
| g21458.t1 | SEC10 | 0.93 | positive |
| g1039.t1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 0.93 | positive |
| g2791.t1 | SH2-SH3 ADAPTOR PROTEIN-RELATED | 0.92 | positive |
| g4078.t1 | O-METHYLTRANSFERASE-RELATED | 0.92 | positive |
| g5463.t1 | S-FORMYLGLUTATHIONE HYDROLASE | 0.92 | positive |
| g21457.t1 | SEC10 | 0.92 | positive |
| g3902.t1 | LEUCINE AMINOPEPTIDASE-RELATED | 0.92 | positive |
| g11956.t1 | ATP-DEPENDENT RNA HELICASE DBP3 | 0.92 | positive |
| g20670.t1 | BRCA1-ASSOCIATED PROTEIN | 0.91 | positive |
| g15751.t1 | UNCHARACTERIZED | 0.91 | positive |
| g28293.t1 | LON PROTEASE | 0.91 | positive |
| g17331.t1 | -- | 0.91 | positive |
| g12482.t1 | 2-OXOGLUTARATE DEHYDROGENASE | 0.91 | positive |
| g7115.t1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED | 0.91 | positive |
| g29860.t1 | BETA-ALA-HIS DIPEPTIDASE | 0.91 | positive |
| g4998.t1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED | 0.90 | positive |
| g14308.t1 | ATP-DEPENDENT PROTEASE | 0.90 | positive |
| g7234.t1 | UNCHARACTERIZED | 0.90 | positive |
| g8533.t1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED | 0.89 | positive |
| g2383.t1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED | 0.89 | positive |
| g10329.t1 | BARDET-BIEDL SYNDROME PROTEIN 5 | 0.89 | positive |
| g11953.t1 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g5144.t1 | SUBGROUP IIII AMINOTRANSFERASE | 0.89 | positive |
| g21691.t1 | UNCHARACTERIZED | 0.89 | positive |
| g12752.t1 | -- | 0.87 | positive |
| g10546.t1 | HEPARANASE | 0.86 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 265 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
