Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g4614.t1 | -- | 1 | positive |
| g33805.t1 | -- | 0.98 | positive |
| g15707.t1 | SOLUTE CARRIER FAMILY 10 MEMBER 7 | 0.97 | positive |
| g17727.t1 | ADP RIBOSYLATION FACTOR-RELATED | 0.97 | positive |
| g7727.t1 | CALRETICULIN AND CALNEXIN | 0.96 | positive |
| g31826.t1 | DESUMOYLATING ISOPEPTIDASE | 0.95 | positive |
| g3184.t1 | SORTING NEXIN-22 AND 24 | 0.95 | positive |
| g12051.t1 | DISCS LARGE | 0.95 | positive |
| g11859.t1 | NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3 | 0.95 | positive |
| g3632.t1 | METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE C PROTEIN | 0.95 | positive |
| g1741.t1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 0.94 | positive |
| g6071.t1 | SYNAPTOTAGMIN 14, ISOFORM D | 0.94 | positive |
| g35803.t1 | STEERIN | 0.94 | positive |
| g5564.t1 | B9 DOMAIN-CONTAINING | 0.94 | positive |
| g35076.t1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED | 0.94 | positive |
| g7070.t1 | DPH3 HOMOLOG-RELATED | 0.93 | positive |
| g32333.t1 | CARDIOLIPIN HYDROLASE | 0.93 | positive |
| g5240.t1 | -- | 0.93 | positive |
| g15671.t1 | CHROMATIN TARGET OF PRMT1 PROTEIN | 0.93 | positive |
| g18489.t1 | -- | 0.93 | positive |
| g11787.t1 | SI:CH211-201H21.5-RELATED | 0.93 | positive |
| g15231.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN | 0.93 | positive |
| g8234.t1 | TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X | 0.92 | positive |
| g8483.t1 | PHOSPHOLIPASE-RELATED | 0.92 | positive |
| g13907.t1 | ANTI-SILENCING PROTEIN 1 | 0.92 | positive |
| g27364.t1 | ADP RIBOSYLATION FACTOR-RELATED | 0.92 | positive |
| g26926.t1 | -- | 0.91 | positive |
| g8758.t1 | TUBULIN-SPECIFIC CHAPERONE A | 0.91 | positive |
| g16550.t1 | COMPLEX III ASSEMBLY FACTOR LYRM7 | 0.91 | positive |
| g6072.t1 | SYNAPTOTAGMIN 14, ISOFORM D | 0.91 | positive |
| g6743.t1 | C5ORF35 | 0.90 | positive |
| g8812.t1 | -- | 0.88 | positive |
| g18636.t1 | PEPTIDYL-TRNA HYDROLASE 2 | 0.88 | positive |
| g19720.t1 | RING-TYPE DOMAIN-CONTAINING PROTEIN | 0.85 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 179 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
