Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5324.t1 | PX DOMAIN-CONTAINING PROTEIN | 1 | positive |
| g23976.t1 | SODIUM/CALCIUM EXCHANGER | 0.94 | positive |
| g6125.t1 | -- | 0.94 | positive |
| g4425.t1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE | 0.93 | positive |
| g6476.t1 | PHD/F-BOX CONTAINING PROTEIN | 0.92 | positive |
| g27667.t1 | -- | 0.92 | positive |
| g5323.t1 | MULTICOPPER OXIDASE-RELATED | 0.92 | positive |
| g7212.t1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 0.92 | positive |
| g9056.t1 | CUE DOMAIN CONTAINING PROTEIN 1 | 0.92 | positive |
| g16775.t1 | SHC TRANSFORMING PROTEIN | 0.92 | positive |
| g1295.t1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 | 0.92 | positive |
| g1170.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II | 0.92 | positive |
| g10554.t1 | OS02G0815200 PROTEIN | 0.92 | positive |
| g9960.t1 | EPH RECEPTOR A5 | 0.91 | positive |
| g21932.t1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 | 0.91 | positive |
| g2282.t1 | -- | 0.91 | positive |
| g11627.t1 | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 0.91 | positive |
| g10600.t1 | F-BOX ONLY PROTEIN | 0.90 | positive |
| g8048.t1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 0.90 | positive |
| g32426.t1 | -- | 0.89 | positive |
| g6654.t1 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 0.89 | positive |
| g27639.t1 | -- | 0.89 | positive |
| g1781.t1 | HMG-BOX TRANSCRIPTION FACTOR BBX | 0.89 | positive |
| g3882.t1 | SERINE/THREONINE-PROTEIN KINASE | 0.88 | positive |
| g12800.t1 | -- | 0.86 | positive |
| g21890.t1 | -- | 0.86 | positive |
| g30135.t1 | TESTIS DEVELOPMENT PROTEIN PRTD | 0.85 | positive |
| g25659.t1 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN | 0.85 | positive |
| g23161.t1 | -- | 0.84 | positive |
| g33005.t1 | -- | 0.83 | positive |
| g4988.t1 | RETROTRANSPOSON | 0.83 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 124 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
