Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5326.t1 | D-GLUCURONYL C5-EPIMERASE | 1 | positive |
| g12341.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.97 | positive |
| g28027.t1 | FI24210P1 | 0.96 | positive |
| g2532.t1 | -- | 0.96 | positive |
| g3404.t1 | CEREBRAL PROTEIN-11-RELATED | 0.96 | positive |
| g7431.t1 | -- | 0.96 | positive |
| g29384.t1 | -- | 0.96 | positive |
| g15081.t1 | - | 0.96 | positive |
| g9525.t1 | - | 0.96 | positive |
| g23138.t1 | UBIQUITIN SPECIFIC PROTEINASE | 0.96 | positive |
| g23743.t1 | LD33804P | 0.96 | positive |
| g633.t1 | MOLTING PROTEIN MLT-4 | 0.95 | positive |
| g4500.t1 | RIKEN CDNA 9930021J03 GENE | 0.95 | positive |
| g3586.t1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 | 0.95 | positive |
| g6210.t1 | METHYLMALONYL-COA MUTASE | 0.95 | positive |
| g920.t1 | FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I | 0.95 | positive |
| g22100.t1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN | 0.95 | positive |
| g572.t1 | ACTIN | 0.95 | positive |
| g4902.t1 | -- | 0.95 | positive |
| g20136.t1 | PHEROMONE SHUTDOWN PROTEIN | 0.95 | positive |
| g27754.t1 | HOMER | 0.95 | positive |
| g27362.t1 | ANDROGEN-INDUCED PROTEIN 1-RELATED | 0.95 | positive |
| g11254.t1 | SPINSTER | 0.95 | positive |
| g28813.t1 | TRANS-ACONITATE 2-METHYLTRANSFERASE-RELATED | 0.95 | positive |
| g9628.t1 | HERMANSKY-PUDLAK SYNDROME 6 PROTEIN | 0.95 | positive |
| g2000.t1 | -- | 0.95 | positive |
| g10641.t1 | DYNEIN LIGHT INTERMEDIATE CHAIN | 0.95 | positive |
| g2179.t1 | NUCLEOPHOSMIN | 0.95 | positive |
| g19336.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.94 | positive |
| g8358.t1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED | 0.94 | positive |
| g1424.t1 | -- | 0.94 | positive |
| g28445.t1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A | 0.94 | positive |
| g11455.t1 | GLYCOSYLTRANSFERASE | 0.94 | positive |
| g21236.t1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER | 0.94 | positive |
| g7810.t1 | CHIMERIN FAMILY MEMBER | 0.94 | positive |
| g1834.t1 | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 0.94 | positive |
| g22087.t1 | OVOCHYMASE-RELATED | 0.94 | positive |
| g27302.t1 | GLYCERATE KINASE | 0.93 | positive |
| g6006.t1 | PHOSPHOLIPASE D - RELATED | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 239 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
