Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5352.t1 | RETINOVIN-RELATED | 1 | positive |
| g10016.t1 | NY-REN-41 ANTIGEN L15 -RELATED | 0.98 | positive |
| g16195.t1 | BTB/POZ DOMAIN-CONTAINING | 0.97 | positive |
| g9742.t1 | ATP-DEPENDENT RNA HELICASE | 0.97 | positive |
| g9302.t1 | RING ZINC FINGER PROTEIN | 0.97 | positive |
| g8841.t1 | LD33804P | 0.97 | positive |
| g20917.t1 | MED-6-RELATED | 0.96 | positive |
| g2090.t1 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED | 0.96 | positive |
| g1478.t1 | -- | 0.96 | positive |
| g15797.t1 | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 0.96 | positive |
| g28815.t1 | ZINC FINGER PROTEIN | 0.96 | positive |
| g8171.t1 | UNCHARACTERIZED | 0.96 | positive |
| g14208.t1 | LOQUACIOUS, ISOFORM B | 0.96 | positive |
| g4222.t1 | KELCH DOMAIN-CONTAINING PROTEIN 10 | 0.96 | positive |
| g35122.t1 | ZGC:113208 | 0.96 | positive |
| g27299.t1 | TRNA (GUANINE-9-) METHYLTRANSFERASE | 0.96 | positive |
| g11975.t1 | COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 | 0.96 | positive |
| g3032.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) | 0.95 | positive |
| g3739.t1 | PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR | 0.95 | positive |
| g11136.t1 | ZINC FINGER PROTEIN AEBP2 | 0.95 | positive |
| g17153.t1 | M-PHASE PHOSPHOPROTEIN 6 | 0.95 | positive |
| g2998.t1 | ENHANCER OF POLYCOMB | 0.95 | positive |
| g9195.t1 | RGS-GAIP INTERACTING PROTEIN GIPC | 0.95 | positive |
| g26215.t1 | -- | 0.95 | positive |
| g13660.t1 | METHYLTRANSFERASE | 0.95 | positive |
| g20220.t1 | -- | 0.95 | positive |
| g20975.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g32097.t1 | -- | 0.94 | positive |
| g9712.t1 | -- | 0.94 | positive |
| g5209.t1 | G PATCH DOMAIN CONTAINING PROTEIN 2 | 0.92 | positive |
| g17588.t1 | -- | 0.87 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 151 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
