Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5379.t1 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN | 1 | positive |
| g19552.t1 | SEC31-RELATED PROTEIN | 0.92 | positive |
| g1544.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.92 | positive |
| g31982.t1 | PESCADILLO - RELATED | 0.92 | positive |
| g30302.t1 | TOLL-INTERACTING PROTEIN | 0.90 | positive |
| g3217.t1 | GPALPP MOTIFS-CONTAINING PROTEIN 1 | 0.89 | positive |
| g20801.t1 | WD REPEAT-CONTAINING PROTEIN 55 | 0.89 | positive |
| g17854.t1 | 50S RIBOSOMAL PROTEIN L21 | 0.89 | positive |
| g30915.t1 | 26S PROTEASOME REGULATORY SUBUNIT | 0.89 | positive |
| g11944.t1 | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN | 0.88 | positive |
| g5657.t1 | RING FINGER PROTEIN 17 | 0.88 | positive |
| g6338.t1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL | 0.88 | positive |
| g24048.t1 | PROTEASOME MATURATION PROTEIN UMP1 | 0.87 | positive |
| g10422.t1 | DNA HELICASE RECQ FAMILY MEMBER | 0.86 | positive |
| g27949.t1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED | 0.85 | positive |
| g8781.t1 | CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN | 0.85 | positive |
| g23145.t1 | METALLOPROTEASE | 0.85 | positive |
| g2198.t1 | APOPTOSIS-INDUCING FACTOR 1 | 0.84 | positive |
| g35489.t1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX ASSEMBLY FACTOR 1 FAMILY MEMBER | 0.84 | positive |
| g12301.t1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER | 0.84 | positive |
| g12490.t1 | -- | 0.84 | positive |
| g13063.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER | 0.83 | positive |
| g31561.t1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED | 0.83 | positive |
| g12976.t1 | UREASE ACCESSORY PROTEIN F | 0.82 | positive |
| g8748.t1 | MEMBRALIN/KINETOCHORE PROTEIN NUF2 | 0.81 | positive |
| g1466.t1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 | 0.80 | positive |
| g20714.t1 | SEPTIN | 0.80 | positive |
| g17340.t1 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN | 0.78 | positive |
| g32135.t1 | PESCADILLO - RELATED | 0.76 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 211 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
