Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5482.t1 | C5ORF31 | 1 | positive |
| g27121.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 | 0.99 | positive |
| g7597.t1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED | 0.99 | positive |
| g1993.t1 | -- | 0.99 | positive |
| g1456.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED | 0.99 | positive |
| g8486.t1 | TESTIS-SPECIFIC GENE 13 PROTEIN | 0.99 | positive |
| g22111.t1 | NUCLEOTIDE KINASE | 0.99 | positive |
| g14804.t1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 0.99 | positive |
| g2862.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 32 | 0.99 | positive |
| g964.t1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED | 0.99 | positive |
| g7566.t1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 | 0.99 | positive |
| g7216.t1 | NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR | 0.99 | positive |
| g12125.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR | 0.98 | positive |
| g17860.t1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 | 0.98 | positive |
| g30775.t1 | MULTICOPPER OXIDASE-RELATED | 0.98 | positive |
| g9301.t1 | COILED-COIL DOMAIN CONTAINING 198 | 0.98 | positive |
| g16270.t1 | UNCHARACTERIZED | 0.98 | positive |
| g8036.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 | 0.98 | positive |
| g3323.t1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A | 0.98 | positive |
| g4737.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 105 | 0.98 | positive |
| g18554.t1 | STABILIZER OF AXONEMAL MICROTUBULES 2 | 0.98 | positive |
| g26997.t1 | UNCHARACTERIZED | 0.98 | positive |
| g24516.t1 | TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3 | 0.98 | positive |
| g21539.t1 | UNCHARACTERIZED | 0.98 | positive |
| g2521.t1 | REGULATOR OF G-PROTEIN SIGNALING 22 | 0.98 | positive |
| g29936.t1 | LAMIN DM0-RELATED | 0.98 | positive |
| g110.t1 | THYMUS, BRAIN AND TESTES-ASSOCIATED | 0.98 | positive |
| g15750.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 153 | 0.98 | positive |
| g34414.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 0.98 | positive |
| g2119.t1 | -- | 0.98 | positive |
| g9266.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 | 0.98 | positive |
| g20612.t1 | -- | 0.98 | positive |
| g16139.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN | 0.98 | positive |
| g21196.t1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 48 | 0.98 | positive |
| g12086.t1 | -- | 0.98 | positive |
| g12741.t1 | KINESIN-RELATED | 0.98 | positive |
| g12087.t1 | -- | 0.98 | positive |
| g7880.t1 | CENTROSOMAL PROTEIN 2 | 0.98 | positive |
| g34215.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 153 | 0.97 | positive |
| g26973.t1 | ALDEHYDE DEHYDROGENASE-RELATED | 0.97 | positive |
| g3530.t1 | LEUCOKININ RECEPTOR-RELATED | 0.97 | positive |
| g33773.t1 | UNCHARACTERIZED | 0.97 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 327 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
