Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5564.t1 | B9 DOMAIN-CONTAINING | 1 | positive |
| g3184.t1 | SORTING NEXIN-22 AND 24 | 0.96 | positive |
| g19206.t1 | UNCHARACTERIZED | 0.96 | positive |
| g13907.t1 | ANTI-SILENCING PROTEIN 1 | 0.96 | positive |
| g20493.t1 | LD44762P | 0.96 | positive |
| g3035.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD | 0.95 | positive |
| g379.t1 | AP-5 COMPLEX SUBUNIT MU-1 | 0.95 | positive |
| g17896.t1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 | 0.95 | positive |
| g1741.t1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 0.95 | positive |
| g2524.t1 | MYOSIN LIGHT CHAIN 1, 3 | 0.95 | positive |
| g6485.t1 | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 0.95 | positive |
| g14959.t1 | RAN GTPASE-ACTIVATING PROTEIN 1 | 0.94 | positive |
| g640.t1 | UNCHARACTERIZED | 0.94 | positive |
| g2939.t1 | DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE | 0.94 | positive |
| g18489.t1 | -- | 0.94 | positive |
| g3932.t1 | -- | 0.94 | positive |
| g12005.t1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER | 0.94 | positive |
| g3984.t1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 0.94 | positive |
| g27739.t1 | POTASSIUM CHANNEL, SUBFAMILY K | 0.94 | positive |
| g31428.t1 | NEUROTRANSMITTER GATED ION CHANNEL | 0.94 | positive |
| g13770.t1 | PROTEIN PHOSPHATASE 2C | 0.94 | positive |
| g15231.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g5240.t1 | -- | 0.94 | positive |
| g3590.t1 | ATP-BINDING CASSETTE SUB-FAMILY C | 0.94 | positive |
| g4614.t1 | -- | 0.94 | positive |
| g3275.t1 | -- | 0.93 | positive |
| g28859.t1 | SORBITOL DEHYDROGENASE | 0.93 | positive |
| g2574.t1 | INOSITOL POLYPHOSPHATE KINASE | 0.93 | positive |
| g2578.t1 | SPERM PROTEIN HOMOLOG | 0.93 | positive |
| g15807.t1 | -- | 0.92 | positive |
| g25341.t1 | PROTEIN SIDEKICK | 0.92 | positive |
| g16899.t1 | -- | 0.92 | positive |
| g11787.t1 | SI:CH211-201H21.5-RELATED | 0.91 | positive |
| g20581.t1 | -- | 0.91 | positive |
| g15719.t1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED | 0.88 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 213 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
