Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5635.t1 | RMLC-LIKE JELLY ROLL FOLD PROTEIN | 1 | positive |
| g480.t1 | RNA-BINDING PROTEIN 8A | 0.95 | positive |
| g13321.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN 5 | 0.94 | positive |
| g11137.t1 | MUSCLEBLIND-LIKE PROTEIN | 0.94 | positive |
| g14178.t1 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS | 0.93 | positive |
| g12825.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER | 0.93 | positive |
| g2031.t1 | -- | 0.92 | positive |
| g23509.t1 | SAP18 | 0.92 | positive |
| g913.t1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT K | 0.92 | positive |
| g20241.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER | 0.91 | positive |
| g6217.t1 | HISTONE H2A | 0.91 | positive |
| g20896.t1 | PHOSPHOGLYCOLATE PHOSPHATASE | 0.90 | positive |
| g9173.t1 | SER/THR PROTEIN KINASE-TRB | 0.90 | positive |
| g18835.t1 | RHO GDP-DISSOCIATION INHIBITOR | 0.90 | positive |
| g16659.t1 | U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A | 0.90 | positive |
| g19288.t1 | DRAB11-RELATED | 0.90 | positive |
| g9877.t1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 | 0.89 | positive |
| g1275.t1 | ADDUCIN | 0.88 | positive |
| g5011.t1 | TANDEM PH DOMAIN CONTAINING PROTEIN | 0.87 | positive |
| g18043.t1 | ZGC:195170 | 0.85 | positive |
| g25010.t1 | -- | 0.83 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 107 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
