Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5643.t1 | PR DOMAIN ZINC FINGER PROTEIN | 1 | positive |
| g13688.t1 | UNCHARACTERIZED | 0.96 | positive |
| g16274.t1 | POLY [ADP-RIBOSE] POLYMERASE | 0.96 | positive |
| g6625.t1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN | 0.96 | positive |
| g35594.t1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT | 0.94 | positive |
| g16784.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED | 0.92 | positive |
| g28265.t1 | SER/THR-PROTEIN KINASE RIO2 | 0.92 | positive |
| g10734.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 | 0.92 | positive |
| g1541.t1 | UNCHARACTERIZED | 0.92 | positive |
| g21382.t1 | DNA2/NAM7 HELICASE FAMILY | 0.92 | positive |
| g596.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 0.92 | positive |
| g35042.t1 | WD REPEAT DOMAIN-CONTAINING FAMILY | 0.91 | positive |
| g35418.t1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1 | 0.91 | positive |
| g16896.t1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 0.91 | positive |
| g11026.t1 | RNA RECOGNITION MOTIF-CONTAINING | 0.90 | positive |
| g5217.t1 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 0.90 | positive |
| g34910.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.90 | positive |
| g8874.t1 | CYTOSOLIC PHOSPHOLIPASE A2 | 0.90 | positive |
| g15353.t1 | UBIQUITIN-CONJUGATING ENZYME E2 | 0.90 | positive |
| g5617.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | 0.90 | positive |
| g29060.t1 | MOLTING PROTEIN MLT-4 | 0.90 | positive |
| g19714.t1 | LD33804P | 0.89 | positive |
| g305.t1 | -- | 0.89 | positive |
| g27171.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 0.89 | positive |
| g5095.t1 | MITOGEN-ACTIVATED PROTEIN KINASE | 0.89 | positive |
| g308.t1 | CENTROSOMAL PROTEIN KIZUNA | 0.89 | positive |
| g33085.t1 | MULTICOPPER OXIDASE-RELATED | 0.88 | positive |
| g2374.t1 | PROTEIN FAM220A | 0.88 | positive |
| g23617.t1 | -- | 0.88 | positive |
| g13640.t1 | SPHINGOSINE KINASE | 0.88 | positive |
| g3207.t1 | -- | 0.88 | positive |
| g2797.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.88 | positive |
| g13534.t1 | AHD DOMAIN-CONTAINING PROTEIN | 0.87 | positive |
| g8340.t1 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 0.87 | positive |
| g3297.t1 | PERFORIN-LIKE PROTEIN 1 | 0.84 | positive |
| g11157.t1 | -- | 0.81 | positive |
| g24219.t1 | -- | 0.80 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 198 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
