Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g5758.t1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM22 | 1 | positive |
| g20119.t1 | TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT | 0.98 | positive |
| g17242.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.97 | positive |
| g19430.t1 | UNCHARACTERIZED | 0.97 | positive |
| g11582.t1 | BRIX DOMAIN CONTAINING PROTEIN | 0.97 | positive |
| g14214.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.97 | positive |
| g27410.t1 | METALLOPROTEASE TLDD | 0.97 | positive |
| g3876.t1 | TRANS-SULFURATION ENZYME FAMILY MEMBER | 0.97 | positive |
| g11405.t1 | MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT | 0.97 | positive |
| g30074.t1 | -- | 0.97 | positive |
| g2889.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.97 | positive |
| g28714.t1 | METALLOPROTEASE TLDD | 0.97 | positive |
| g16319.t1 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED | 0.97 | positive |
| g12697.t1 | COATOMER SUBUNIT EPSILON | 0.96 | positive |
| g2887.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.96 | positive |
| g23524.t1 | ATP SYNTHASE DELTA/EPSILON CHAIN | 0.96 | positive |
| g33940.t1 | -- | 0.96 | positive |
| g33909.t1 | -- | 0.96 | positive |
| g27049.t1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 | 0.96 | positive |
| g4524.t1 | WD REPEAT-CONTAINING PROTEIN 55 | 0.96 | positive |
| g1530.t1 | -- | 0.96 | positive |
| g26163.t1 | SERINE-THREONINE PROTEIN KINASE | 0.96 | positive |
| g4728.t1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE | 0.96 | positive |
| g21886.t1 | DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT | 0.96 | positive |
| g1567.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 0.96 | positive |
| g12330.t1 | SUGAR KINASE | 0.96 | positive |
| g17649.t1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL | 0.95 | positive |
| g21836.t1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN | 0.95 | positive |
| g21069.t1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN | 0.95 | positive |
| g19466.t1 | UNCHARACTERIZED | 0.95 | positive |
| g1303.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 | 0.95 | positive |
| g3012.t1 | FLAVIN MONOAMINE OXIDASE | 0.95 | positive |
| g14327.t1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10 | 0.95 | positive |
| g5997.t1 | -- | 0.95 | positive |
| g2575.t1 | -- | 0.95 | positive |
| g2816.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9 | 0.95 | positive |
| g7902.t1 | PROTEASOME SUBUNIT ALPHA/BETA | 0.94 | positive |
| g15227.t1 | AGAP005574-PA | 0.94 | positive |
| g2338.t1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA | 0.94 | positive |
| g7383.t1 | ARP2/3 COMPLEX 20 KD SUBUNIT | 0.94 | positive |
| g33809.t1 | -- | 0.93 | positive |
| g33884.t1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 | 0.92 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 263 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
