Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g596.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 1 | positive |
| g15353.t1 | UBIQUITIN-CONJUGATING ENZYME E2 | 0.95 | positive |
| g35418.t1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1 | 0.94 | positive |
| g18295.t1 | -- | 0.94 | positive |
| g27358.t1 | FORMIMINOTRANSFERASE-CYCLODEAMINASE | 0.94 | positive |
| g2374.t1 | PROTEIN FAM220A | 0.92 | positive |
| g1541.t1 | UNCHARACTERIZED | 0.92 | positive |
| g14851.t1 | TATA-BOX BINDING PROTEIN | 0.92 | positive |
| g16784.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED | 0.92 | positive |
| g5643.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.92 | positive |
| g2597.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.92 | positive |
| g832.t1 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 0.91 | positive |
| g21540.t1 | BTB/POZ DOMAIN-CONTAINING | 0.91 | positive |
| g11990.t1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN | 0.91 | positive |
| g28265.t1 | SER/THR-PROTEIN KINASE RIO2 | 0.91 | positive |
| g13688.t1 | UNCHARACTERIZED | 0.91 | positive |
| g4221.t1 | OVOCHYMASE-RELATED | 0.91 | positive |
| g16274.t1 | POLY [ADP-RIBOSE] POLYMERASE | 0.90 | positive |
| g1436.t1 | PHOSPHATIDYLSERINE DECARBOXYLASE | 0.90 | positive |
| g29767.t1 | CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1 | 0.90 | positive |
| g5617.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | 0.90 | positive |
| g19930.t1 | -- | 0.90 | positive |
| g17413.t1 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN | 0.89 | positive |
| g14000.t1 | LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN | 0.89 | positive |
| g22244.t1 | RETINOL DEHYDROGENASE | 0.88 | positive |
| g34910.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.88 | positive |
| g21263.t1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED | 0.88 | positive |
| g13640.t1 | SPHINGOSINE KINASE | 0.88 | positive |
| g14181.t1 | SOLUTE CARRIER FAMILY 35 | 0.88 | positive |
| g26937.t1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED | 0.87 | positive |
| g14421.t1 | G-PROTEIN COUPLED RECEPTOR | 0.87 | positive |
| g13534.t1 | AHD DOMAIN-CONTAINING PROTEIN | 0.87 | positive |
| g14397.t1 | VESICLE-ASSOCIATED MEMBRANE PROTEIN 4 | 0.86 | positive |
| g34908.t1 | -- | 0.85 | positive |
| g24219.t1 | -- | 0.85 | positive |
| g11157.t1 | -- | 0.84 | positive |
| g22877.t1 | BTB/POZ DOMAIN-CONTAINING | 0.83 | positive |
| g25205.t1 | -- | 0.83 | positive |
| g17244.t1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR | 0.81 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 191 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
