Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g601.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g601.t1

Gene ID	Description	PCC	Relationship
g601.t1	TETRATRICOPEPTIDE REPEAT PROTEIN 13	1	positive
g13062.t1	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	0.97	positive
g33163.t1	--	0.97	positive
g16657.t1	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	0.97	positive
g30892.t1	PHYTOENE DESATURASE	0.97	positive
g10188.t1	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	0.97	positive
g14007.t1	BTB/POZ DOMAIN-CONTAINING	0.97	positive
g16521.t1	PHYTOENE DESATURASE	0.96	positive
g2936.t1	CENTROSOMAL PROTEIN 2	0.96	positive
g7188.t1	LD08641P	0.96	positive
g9748.t1	TYROSINE-PROTEIN KINASE RECEPTOR	0.96	positive
g10502.t1	POTASSIUM/PROTON ANTIPORTER-RELATED	0.96	positive
g34163.t1	--	0.96	positive
g1561.t1	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	0.96	positive
g23171.t1	--	0.95	positive
g17455.t1	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	0.95	positive
g23615.t1	POLY A POLYMERASE	0.95	positive
g16730.t1	PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1	0.95	positive
g30634.t1	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	0.94	positive
g13790.t1	ANGIOTENSIN-CONVERTING ENZYME	0.94	positive
g17408.t1	UNCHARACTERIZED	0.94	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 68 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g30892.t1 g16521.t1
g30892.t1 g14007.t1
g16521.t1 g14007.t1
g34163.t1 g16657.t1
g16657.t1 g2936.t1
g30892.t1 g2936.t1
g1561.t1 g10188.t1
g16521.t1 g13062.t1
g33163.t1 g9748.t1
g30892.t1 g13062.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.