Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6267.t1 | MYOSIN LIGHT CHAIN 1, 3 | 1 | positive |
| g7511.t1 | TUBULIN MONOGLYCYLASE TTLL3 | 0.90 | positive |
| g33510.t1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN | 0.89 | positive |
| g26228.t1 | TRANSKETOLASE | 0.89 | positive |
| g18.t1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 | 0.89 | positive |
| g28887.t1 | GLUTAMATE CYSTEINE LIGASE REGULATORY SUBUNIT | 0.88 | positive |
| g14709.t1 | ADIPOLIN | 0.88 | positive |
| g4998.t1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED | 0.87 | positive |
| g2383.t1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED | 0.87 | positive |
| g2080.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | 0.87 | positive |
| g35623.t1 | -- | 0.87 | positive |
| g27416.t1 | RAS GTPASE-ACTIVATING PROTEINS | 0.86 | positive |
| g9961.t1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED | 0.86 | positive |
| g6601.t1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE | 0.85 | positive |
| g9141.t1 | GLYCOGEN PHOSPHORYLASE | 0.85 | positive |
| g21851.t1 | DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1 | 0.85 | positive |
| g446.t1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE | 0.85 | positive |
| g5478.t1 | SERINE PROTEASE INHIBITOR | 0.84 | positive |
| g5144.t1 | SUBGROUP IIII AMINOTRANSFERASE | 0.84 | positive |
| g28077.t1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 0.84 | positive |
| g23238.t1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 0.84 | positive |
| g13204.t1 | ACETYL-COA CARBOXYLASE, ISOFORM A | 0.83 | positive |
| g10547.t1 | NACHT, LRR AND CARD DOMAINS-CONTAINING | 0.83 | positive |
| g1474.t1 | DEP DOMAIN PROTEIN | 0.83 | positive |
| g11986.t1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | 0.82 | positive |
| g6753.t1 | -- | 0.80 | positive |
| g27082.t1 | - | 0.80 | positive |
| g1969.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.79 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 117 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
