Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6367.t1 | CELL DIVISION PROTEIN KINASE | 1 | positive |
| g6838.t1 | SERINE-THREONINE PROTEIN KINASE | 0.96 | positive |
| g35594.t1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT | 0.96 | positive |
| g21382.t1 | DNA2/NAM7 HELICASE FAMILY | 0.95 | positive |
| g769.t1 | GLYCOGENIN SUBFAMILY MEMBER | 0.95 | positive |
| g9904.t1 | -- | 0.95 | positive |
| g11026.t1 | RNA RECOGNITION MOTIF-CONTAINING | 0.95 | positive |
| g34387.t1 | -- | 0.94 | positive |
| g10847.t1 | UNNAMED PRODUCT | 0.94 | positive |
| g31432.t1 | RNA BINDING PROTEIN | 0.94 | positive |
| g10593.t1 | UNCHARACTERIZED | 0.94 | positive |
| g14967.t1 | MRNA-CAPPING ENZYME | 0.94 | positive |
| g6625.t1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN | 0.94 | positive |
| g5764.t1 | BCL-2 RELATED | 0.94 | positive |
| g9168.t1 | -- | 0.94 | positive |
| g10462.t1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 0.94 | positive |
| g13575.t1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER | 0.94 | positive |
| g2557.t1 | TUBULIN POLYGLUTAMYLASE | 0.94 | positive |
| g9341.t1 | RIBOSOMAL PROTEIN L13 | 0.93 | positive |
| g29060.t1 | MOLTING PROTEIN MLT-4 | 0.93 | positive |
| g5122.t1 | ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN | 0.93 | positive |
| g16274.t1 | POLY [ADP-RIBOSE] POLYMERASE | 0.92 | positive |
| g5440.t1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 | 0.92 | positive |
| g8874.t1 | CYTOSOLIC PHOSPHOLIPASE A2 | 0.91 | positive |
| g20940.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53 | 0.91 | positive |
| g19930.t1 | -- | 0.91 | positive |
| g35305.t1 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN | 0.91 | positive |
| g8028.t1 | UNCHARACTERIZED | 0.90 | positive |
| g2797.t1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR | 0.90 | positive |
| g4031.t1 | SI:CH211-189E2.2 | 0.89 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 125 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
