Co-expression Network Results

Co-expression Network Analysis

Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.

📊 Global Network of g6489.t1

Co-expression Network View

Network Legend

Yellow: Query proteins

Green: Interaction proteins

Pink line: Own interaction + positive co-expression

Blue line: Own interaction + negative co-expression

Node size reflects how many connections the gene has (hubs are drawn larger). Hover any node to see the annotation of the gene it stands for (PANTHER / InterPro / GO description, or NR when the others are absent) and a link to its gene page.

📋 View Detailed Network Information

Co-expressed Genes of g6489.t1

Gene ID	Description	PCC	Relationship
g6489.t1	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	positive
g9058.t1	--	0.95	positive
g489.t1	PWWP DOMAIN-CONTAINING DNA REPAIR FACTOR 3 FAMILY MEMBER	0.95	positive
g15238.t1	GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN	0.95	positive
g17518.t1	DRAB5-RELATED	0.94	positive
g22689.t1	METAL TRANSPORTER CNNM	0.94	positive
g8164.t1	--	0.94	positive
g15943.t1	CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS	0.94	positive
g1294.t1	--	0.94	positive
g6314.t1	--	0.94	positive
g3326.t1	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	0.93	positive
g24733.t1	CXC DOMAIN-CONTAINING PROTEIN-RELATED	0.93	positive
g10324.t1	SPLICING FACTOR 3B, SUBUNIT 1-RELATED	0.93	positive
g25804.t1	TRANSPOSON	0.93	positive
g9174.t1	SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1	0.92	positive
g1830.t1	PROTEIN DIAPHANOUS	0.92	positive
g2433.t1	-	0.91	positive
g19445.t1	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	0.90	positive

Further Analysis for Network Members

Next Step: Dynamic Expression View

What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.

Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log₂((mean of group A + 1) / (mean of group B + 1)). This network has 44 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.

Or take the pairs by hand

g15238.t1 g8164.t1
g15238.t1 g489.t1
g8164.t1 g489.t1
g22689.t1 g6314.t1
g22689.t1 g15238.t1
g22689.t1 g8164.t1
g22689.t1 g3326.t1
g8164.t1 g1294.t1
g17518.t1 g489.t1
g22689.t1 g9058.t1

Click to select all, then paste into step 2 of Dynamic Expression View as GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.