Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6502.t1 | CCCH ZINC FINGER/TIS11-RELATED | 1 | positive |
| g6459.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.98 | positive |
| g19148.t1 | HOMEOBOX PROTEIN MOX | 0.97 | positive |
| g6644.t1 | REGULATOR OF G PROTEIN SIGNALING | 0.97 | positive |
| g13891.t1 | SOWAH (DROSOPHILA) HOMOLOG | 0.96 | positive |
| g32099.t1 | METABOTROPIC GLUTAMATE RECEPTOR | 0.96 | positive |
| g10532.t1 | RETROTRANSPOSON | 0.96 | positive |
| g34880.t1 | ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1 | 0.96 | positive |
| g11967.t1 | ETS | 0.96 | positive |
| g19119.t1 | RIKEN CDNA 1700001C19 GENE | 0.96 | positive |
| g30127.t1 | -- | 0.95 | positive |
| g5414.t1 | LIPID PHOSPHATE PHOSPHATASE | 0.95 | positive |
| g619.t1 | - | 0.95 | positive |
| g11430.t1 | UNCHARACTERIZED | 0.95 | positive |
| g31692.t1 | RETROTRANSPOSON | 0.95 | positive |
| g5349.t1 | FAMILY WITH SEQUENCE SIMILARITY 216 MEMBER A | 0.95 | positive |
| g6163.t1 | PROTEIN CEBPZOS | 0.95 | positive |
| g17215.t1 | TRAF3-INTERACTING PROTEIN 1 | 0.95 | positive |
| g7773.t1 | TYROSINE-PROTEIN KINASE RECEPTOR | 0.95 | positive |
| g24822.t1 | -- | 0.94 | positive |
| g15093.t1 | NETRIN/LAMININ-RELATED | 0.94 | positive |
| g34939.t1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS | 0.94 | positive |
| g12975.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED | 0.94 | positive |
| g26683.t1 | PROTEIN CBG26694 | 0.94 | positive |
| g6410.t1 | -- | 0.94 | positive |
| g19253.t1 | RNA-BINDING PROTEIN | 0.94 | positive |
| g32605.t1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 | 0.93 | positive |
| g24079.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED | 0.92 | positive |
| g25315.t1 | -- | 0.92 | positive |
| g32564.t1 | RETROTRANSPOSON | 0.91 | positive |
| g24181.t1 | RGD1565685 PROTEIN | 0.91 | positive |
| g18368.t1 | D-AMINO ACID OXIDASE | 0.90 | positive |
| g32831.t1 | RETROTRANSPOSON | 0.90 | positive |
| g11421.t1 | -- | 0.88 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 114 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
