Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6584.t1 | GATA-TYPE ZINC FINGER PROTEIN 1 | 1 | positive |
| g27270.t1 | BOULE-RELATED | 0.98 | positive |
| g20604.t1 | SPOT14 FAMILY MEMBER | 0.97 | positive |
| g6271.t1 | CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN | 0.97 | positive |
| g2867.t1 | GLYCOPROTEIN HORMONE RECEPTOR | 0.97 | positive |
| g16665.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.97 | positive |
| g5767.t1 | UNCHARACTERIZED | 0.97 | positive |
| g21084.t1 | TRANSLATION FACTOR GUF1-RELATED | 0.96 | positive |
| g27357.t1 | - | 0.96 | positive |
| g4804.t1 | FACTOR VIII-ASSOCIATED GENE 1 | 0.96 | positive |
| g1243.t1 | TOLL-LIKE RECEPTOR | 0.96 | positive |
| g22068.t1 | BONUS, ISOFORM C-RELATED | 0.96 | positive |
| g1679.t1 | BETA-HEXOSAMINIDASE | 0.96 | positive |
| g1478.t1 | -- | 0.96 | positive |
| g11711.t1 | BATTENIN | 0.96 | positive |
| g18671.t1 | BATTENIN | 0.96 | positive |
| g2568.t1 | -- | 0.96 | positive |
| g659.t1 | -- | 0.96 | positive |
| g2998.t1 | ENHANCER OF POLYCOMB | 0.96 | positive |
| g15757.t1 | UNCHARACTERIZED | 0.95 | positive |
| g23270.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I | 0.95 | positive |
| g22788.t1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC | 0.95 | positive |
| g9788.t1 | -- | 0.95 | positive |
| g10783.t1 | -- | 0.94 | positive |
| g32331.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN | 0.94 | positive |
| g9341.t1 | RIBOSOMAL PROTEIN L13 | 0.93 | positive |
| g34295.t1 | POTE ANKYRIN DOMAIN | 0.88 | positive |
| g7577.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED | 0.84 | positive |
| g27829.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS | 0.81 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 162 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
