Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6625.t1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN | 1 | positive |
| g16274.t1 | POLY [ADP-RIBOSE] POLYMERASE | 0.96 | positive |
| g5643.t1 | PR DOMAIN ZINC FINGER PROTEIN | 0.96 | positive |
| g35594.t1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT | 0.95 | positive |
| g11026.t1 | RNA RECOGNITION MOTIF-CONTAINING | 0.95 | positive |
| g21382.t1 | DNA2/NAM7 HELICASE FAMILY | 0.95 | positive |
| g13688.t1 | UNCHARACTERIZED | 0.94 | positive |
| g29060.t1 | MOLTING PROTEIN MLT-4 | 0.94 | positive |
| g5617.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | 0.94 | positive |
| g6367.t1 | CELL DIVISION PROTEIN KINASE | 0.94 | positive |
| g10734.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 16 | 0.93 | positive |
| g28290.t1 | SERINE/THREONINE-PROTEIN KINASE 17 | 0.93 | positive |
| g5217.t1 | FORMIN HOMOLOGY 2 FAMILY MEMBER | 0.93 | positive |
| g16896.t1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER | 0.93 | positive |
| g16784.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED | 0.92 | positive |
| g308.t1 | CENTROSOMAL PROTEIN KIZUNA | 0.92 | positive |
| g769.t1 | GLYCOGENIN SUBFAMILY MEMBER | 0.92 | positive |
| g27358.t1 | FORMIMINOTRANSFERASE-CYCLODEAMINASE | 0.92 | positive |
| g27157.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 171 | 0.91 | positive |
| g5122.t1 | ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN | 0.91 | positive |
| g1541.t1 | UNCHARACTERIZED | 0.91 | positive |
| g8874.t1 | CYTOSOLIC PHOSPHOLIPASE A2 | 0.91 | positive |
| g23617.t1 | -- | 0.91 | positive |
| g19930.t1 | -- | 0.90 | positive |
| g17798.t1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE | 0.90 | positive |
| g28265.t1 | SER/THR-PROTEIN KINASE RIO2 | 0.89 | positive |
| g27992.t1 | -- | 0.89 | positive |
| g34910.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B | 0.89 | positive |
| g5296.t1 | ESOPHAGEAL CANCER ASSOCIATED PROTEIN | 0.89 | positive |
| g13534.t1 | AHD DOMAIN-CONTAINING PROTEIN | 0.88 | positive |
| g31714.t1 | UBIQUITIN-CONJUGATING ENZYME E2 | 0.88 | positive |
| g2749.t1 | -- | 0.87 | positive |
| g17322.t1 | -- | 0.86 | positive |
| g18932.t1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 | 0.86 | positive |
| g21193.t1 | ZINC FINGER, ZZ TYPE | 0.86 | positive |
| g28211.t1 | BONUS, ISOFORM C-RELATED | 0.79 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 179 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
