Interactive visualization of gene co-expression networks, expression and funtional enrichment analysis.
| Gene ID | Description | PCC | Relationship |
|---|---|---|---|
| g6693.t1 | UPF0598 PROTEIN C8ORF82 | 1 | positive |
| g6129.t1 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 | 0.97 | positive |
| g17935.t1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 | 0.97 | positive |
| g1437.t1 | 39A RIBOSOMAL PROTEIN L50, MITOCHONDRIAL | 0.97 | positive |
| g15278.t1 | EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 | 0.97 | positive |
| g9735.t1 | ATAXIN-3-RELATED | 0.97 | positive |
| g34344.t1 | MITOCHONDRIAL CARRIER PROTEIN RIM2 | 0.97 | positive |
| g29028.t1 | TTC17 PROTEIN | 0.96 | positive |
| g6466.t1 | PHOSDUCIN-LIKE PROTEIN | 0.96 | positive |
| g366.t1 | KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG | 0.96 | positive |
| g9895.t1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 | 0.96 | positive |
| g8443.t1 | IMPORTIN ALPHA | 0.96 | positive |
| g9882.t1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 | 0.96 | positive |
| g22364.t1 | SIKE FAMILY MEMBER | 0.96 | positive |
| g1423.t1 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN | 0.96 | positive |
| g352.t1 | -- | 0.96 | positive |
| g36199.t1 | HISTONE DEACETYLASE HDAC1-RELATED | 0.95 | positive |
| g16173.t1 | HISTIDINE TRIAD HIT PROTEIN | 0.95 | positive |
| g15970.t1 | TROPONIN C-AKIN-1 PROTEIN | 0.95 | positive |
| g22005.t1 | ZINC FINGERS AND HOMEOBOXES PROTEIN 1, ISOFORM 2 | 0.95 | positive |
| g25745.t1 | CYSTINOSIN | 0.94 | positive |
| g20124.t1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN | 0.93 | positive |
| g28749.t1 | AMINO ACID TRANSPORTER | 0.90 | positive |
What this does. Everything above treats every gene the same way. Dynamic Expression View redraws this same network but colours each node by how much that gene changes between two conditions, so you can see which part of the network responds. It needs one input the network itself does not carry: a per-gene expression ratio.
Where the ratio comes from. CnidoSite holds an RNA-seq expression matrix for this species, so the ratio can be built here rather than elsewhere: pick the samples for each side of your comparison and every gene gets log2((mean of group A + 1) / (mean of group B + 1)). This network has 86 gene pairs and one run of Dynamic Expression View draws at most 10, so the button below carries the 10 with the strongest |PCC|.
GeneA GeneB, one pair per line. Its step 3 still needs the expression ratios.
